LOCUS AXCW01000219 7171 bp DNA linear BCT 28-MAR-2014 DEFINITION Actinotalea ferrariae CF5-4 contig231, whole genome shotgun sequence. ACCESSION AXCW01000219 AXCW01000000 VERSION AXCW01000219.1 DBLINK BioProject: PRJNA215136 BioSample: SAMN02690685 KEYWORDS WGS. SOURCE Actinotalea ferrariae CF5-4 ORGANISM Actinotalea ferrariae CF5-4 Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea. REFERENCE 1 (bases 1 to 7171) AUTHORS Chen,F., Li,Y. and Wang,G. TITLE Actinotalea ferrariae CF5-4 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7171) AUTHORS Chen,F., Li,Y. and Wang,G. TITLE Direct Submission JOURNAL Submitted (10-JAN-2014) College of Life Science and Technology, Huazhong Agriculture University, WuHan, HuBei 430070, China COMMENT Bacteria available from the following culture collections KCTC 29134, CCTCC AB2012198. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/04/2014 09:14:42 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 2.4 (rev. 428102) Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 3,653 CDS :: 3,558 Pseudo Genes :: 42 rRNAs :: 7 ( 5S, 16S, 23S ) tRNAs :: 45 ncRNA :: 1 Frameshifted Genes :: 24 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.05 Genome Coverage :: 172.2x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..7171 /organism="Actinotalea ferrariae CF5-4" /mol_type="genomic DNA" /strain="CF5-4" /isolation_source="iron mining powder" /db_xref="taxon:948458" /geo_loc_name="China: Daye city, Hubei province" /collection_date="2009" gene complement(<1..300) /locus_tag="N866_07715" CDS complement(<1..300) /locus_tag="N866_07715" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_013884363.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DoxX family protein" /protein_id="EYR62541.1" /db_xref="GI:601041623" /translation="MLVRRIARPLLATAFVADGVDAVRRPEAHVDRAEEAYGRLAERV DLPTVDRRRMTTAVRVHGAAVTAAGVALAVGRAPRSAALALAVLTAPVALAHAPWP" gene 673..1293 /locus_tag="N866_07720" CDS 673..1293 /locus_tag="N866_07720" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_014628798.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor" /protein_id="EYR62536.1" /db_xref="GI:601041618" /translation="MSEDTHRAPAEEDDGARAQRFEAEALVYVDQLYSAALRMTRNPT DAEDLVQETVAKAFAAFHQYRPGTNLKAWLYRILTNTFINSYRKKQREPLQSGSDEIE DWQIHRAASHTSAGLRSAEAEALDNLPDSDVKEALQSIGEEFRIAVYLADVEGFAYKE IAEIMGTPIGTVMSRLHRGRRQLRELLTDYARERGLVPASTEGGGR" gene 1290..1586 /locus_tag="N866_07725" CDS 1290..1586 /locus_tag="N866_07725" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_015772080.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="anti-sigma factor" /protein_id="EYR62537.1" /db_xref="GI:601041619" /translation="MSQEHVPPAAGTSGGDAPVDCAEALSRLFEFLDEEVAESNGDRI RQHLADCEPCLAEYDVEDHLKKLIRRSCTEAAPSELHVRIRQQLTVLRTQVGEL" gene 1844..2932 /locus_tag="N866_07730" CDS 1844..2932 /locus_tag="N866_07730" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_013116447.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="twitching motility protein" /protein_id="EYR62538.1" /db_xref="GI:601041620" /translation="MSTAPQSVVPLLHALGGSNASDLHCKVGSPPRLRVDGRLRRLQV PSLTPADTERMLEEVLPADLHDGFRESHEADFAYSLSGVGRFRVNAYQARGTVGMVFR RVSHSAQTLAELALPEVVGELALEPRGLVLVTGPTGSGKTTTLASMVDLINTFREVNI VTIEDPIEILHADKKAMISQREVHHDTADFTVALRAAMRQDPDVILVGEMRDVETVRA ALSAAETGHLVMSTLHTIDAQETINRIVDFFQPYEQKQIRHALAQALRGIVSQRLVRR ADGQGRAAVVEVMVNTGRTAEAIQEPYDNPPIEDLIADGEFYKMQTFDQHLFQLVRDG VITYEDALTVSTKPQDLTVQLRGAGVVH" gene complement(2972..3577) /locus_tag="N866_07735" CDS complement(2972..3577) /locus_tag="N866_07735" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_013884355.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="lysophospholipase" /protein_id="EYR62539.1" /db_xref="GI:601041621" /translation="MTDRALRICVVGDELVAGYGDPKALGWVGRVAARTPADPPALVM PLAVPGETTTALSARWEAETATRLGQDPAVEARLVVGLSHADLAGGISLARSRLNLAN VLDVAEQRRIHTFVVGPPPSTREDDERQAELSAAFGDVARRRQVPYVDTFTPLVHHEQ WLTDLAGGDGRTPGQAGYGLMAWLVLHGGWHRWLGLPDDDA" gene complement(3669..>7171) /gene="kgd" /locus_tag="N866_07740" CDS complement(3669..>7171) /gene="kgd" /locus_tag="N866_07740" /EC_number="4.1.1.71" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_012084428.1" /note="kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="alpha-ketoglutarate decarboxylase" /protein_id="EYR62540.1" /db_xref="GI:601041622" /translation="QATPTTPREPARDASTAPVASAQPATAPYAEQPSSRLEHRDVPE PAVERLRGPAARVVQNMEASLAVPTATSVRAVPAKLMVDNRIVINNHLSRTRGGKVSF THLIGYAVVEALAEMPEMNAGYTLVDDKPAVVQPGAVNLGLAIDLAKPDGSRQLLVPS IKGADRMDFGQFVAAYEDVVRRARGGKLTTDDFAGTTLTLTNPGTIGTVHSVPRLMAG QGAIVGVGAMDYPAEFQGASDEQLARLGVSKVLTLTSTYDHRIIQGAQSGDFLRVVAA KLLGEGGFYDRVFAAVRVPYEPVRWVRDNTVDADTEAAKPARIAELIHAYRSRGHLMA ETDPLAYRQRRHPDLDIQNHGLTLWDLDRVFPTAGFTGKPKATLREILGLLRDSYCRT IGIEYMHLQDPRQRRWLQERLEAGYARTPREDQLRILRRLNAAEAFETFLQTKFVGQK RFSLEGGESLIPLLDGVLSRAAESGLDEVCIGMSHRGRLNVLANIAGKSYGQIFAEFE GNQDPKSVQGSGDVKYHLGTEGTFTAETGATTGVYLAANPSHLEAVDPVLEGVVRAKQ DRIDLGGDGFSVLPVLIHGDAAFAGQGVVVETLNLAQLRGYRTGGTVHVIVNNQVGFT TGPSSSRSTYYTTDVAKGLQVPVFHVNGDDPEACVRVAELAFEFREEFARDVIIDMVC YRRRGHNEGDDPSMTQPLMYNLIEAKRSVRKLYTEALVSRGDITVDEAAQALQDYQSQ LERVFTETRESGVTPPASAEPVAGLEKPESQLEDAGTMVGWRTAVDPEVLHRIGRAHV RPPQGFSVHPKLEQLLAKREQMSREGGIDWGYGELLAFGSLLLEGTPVRLAGQDSRRG TFVQRHAVLHDRRTGAEWTPLLYLASDQAKFWVYDSSLSEFAALGFEYGYSVERPDAL VLWEAQFGDFVNGAQTIIDEFISSSEQKWGQRSSVVLLLPHGFEGQGPDHSSARVERF LQLCAEDNMTVAMPTTPASYFHLLRRQAYDRPRRPLVVATPKSMLRLKAAASGVEDFT SGTFRTVIPETYLDAERHGSVDRVVLSAGKVFYDLLAERVKRGDDRTALVRLEQLYPL DEDALHAALAPFGDAQVVWAQEEPANQGGWSHLAPRLREVLGKDVTLVSRPASASPAA GSAKTHAREQVALVEAAFDR" BASE COUNT 970 a 2563 c 2663 g 975 t ORIGIN 1 gggccagggg gcgtgggcga gggccacggg tgcggtcagg acggccaggg cgagcgcggc 61 gctgcgcggt gcgcgaccca cggccagcgc gacaccggcc gcggtgacgg ctgcaccgtg 121 cacacgcacc gccgtcgtca tccgacgccg gtccaccgtc ggcaggtcga cgcgctccgc 181 gagccggccg tacgcctcct cggcgcggtc cacgtgcgcc tccgggcgcc ggacggcgtc 241 gacgccgtcg gcgacgaacg cggtggcgag cagggggcga gcgatacgcc ggaccagcat 301 ggacgtctcc ttctccgcga cggacgtgcg ctgatcacgc tagccgctcc cgctgcccca 361 cgcccgccgg atgtgcaggg ccccgggcgg ccgggaatgc cccgcccttc ggccggtgtt 421 cgaactggca tgactgccac ctgcacggcg gccgtgggga ccgcgccgtc gacaggcgtc 481 gtcggcgtcc gcgcaccggt ccgacacgcc ccttccctgg gcgaccggtg gtcgccgagc 541 ctgacggccc cgccgcgtcc cgtccgctcc cggggacccc tgaccccgac agcgggcccg 601 ccccgccggt cggcgccggc cgtcggcccc gccgcccccg ccgcccttcc cgggcggcta 661 ggctcggtgt cgatgagcga ggacacgcac cgggctccgg ccgaggagga cgacggcgcg 721 cgcgcccagc ggttcgaggc cgaggcgctg gtgtacgtcg accagctcta ctcggccgcg 781 ctgcggatga cgcgcaaccc gaccgacgcc gaggacctgg tccaggagac cgtcgcgaag 841 gccttcgccg ccttccacca gtaccgaccg ggcacgaacc tgaaggcctg gctgtaccgg 901 atcctcacga acacgttcat caacagctac cgcaagaagc agcgggagcc gctgcagtcc 961 gggtccgacg agatcgagga ctggcagatc caccgggcgg cgtcgcacac ctcggccggg 1021 ctgcgctcgg ccgaggccga ggcgctggac aacctcccgg actccgacgt caaggaggct 1081 ctgcagtcca tcggcgagga gttccgcatc gcggtgtacc tcgcggacgt cgagggcttc 1141 gcgtacaagg agatcgccga gatcatgggg acgccgatcg ggacggtgat gtcccgcctg 1201 caccgcggcc ggcggcagct gcgcgagctg ctcaccgact acgcgcgtga gcgcgggctc 1261 gtcccggcca gcacggaggg tgggggccgg tgagccagga gcacgtgccg cccgccgccg 1321 ggacctccgg cggggacgcc ccggtggact gcgccgaggc gctgtcccgg ctgttcgagt 1381 tcctcgacga ggaggtcgcc gagtccaacg gcgaccgcat ccggcagcac ctcgcggact 1441 gcgagccgtg cctggccgag tacgacgtcg aggaccacct gaagaagctc atccggcgct 1501 cctgcacgga ggccgcgccg tccgagctcc acgtgcgcat ccggcagcag ctgacggtcc 1561 tgcgcaccca ggtgggcgag ctctaggaag gacgagagag ggcggcgggc ccgtccggac 1621 cggccgccct cgtctcacgc gttgggtcgg ttgccgtggt tcgcggcgct gcccttgcgg 1681 gaccggcgct tgcgtccgcg cttgctcatg gtgactcctc gtggggtggg accttgctcc 1741 cggcgggccg ggcacacgag cggtcatcgt cccacacccg ctgcatccag cgcgcatcgc 1801 cccgatgcct caggtcgggc cctgcggcgg ccgatagaag ggcgtgagca ccgcaccgca 1861 gtccgtcgtc cctctcctcc acgcgctcgg ggggtccaac gcctccgacc tgcactgcaa 1921 ggtgggctcg ccgccccggc tgcgggtcga cggccggctg cgtcgcctcc aggtcccctc 1981 cctcacgcct gcggacacgg agcgcatgct cgaggaggtg ctgccggcgg acctgcacga 2041 cggcttcagg gagtcgcacg aggcggactt cgcctactcg ctctccgggg tcggacggtt 2101 ccgcgtcaac gcctaccagg cacgcggcac cgtcggcatg gtcttccgcc gcgtctcgca 2161 ctccgcacag acgctcgcgg agctcgcgct gcccgaggtc gtcggtgagc tggcgctgga 2221 gccccggggt ctcgtgctcg tcacggggcc gaccggctcg ggcaagacga cgacgctggc 2281 gtcgatggtc gacctcatca acacgttccg cgaggtcaac atcgtcacga tcgaggaccc 2341 gatcgagatc ctgcacgccg acaagaaggc gatgatctcc cagcgcgagg tgcaccacga 2401 caccgccgac ttcacggtcg cgctgcgcgc cgcgatgcgg caggacccgg acgtcatcct 2461 cgtcggggag atgcgcgacg tggagacggt ccgggcggcg ctgtccgccg cggagaccgg 2521 ccacctcgtc atgtcgacgc tgcacaccat cgacgcccag gagacgatca accgcatcgt 2581 cgacttcttc cagccgtacg agcagaagca gatccggcac gcgctggccc aggccctgcg 2641 cggcatcgtc tcccagcgcc tcgtgcggcg ggcggacggc cagggccgcg ccgcggtcgt 2701 cgaggtcatg gtcaacacgg gccggaccgc cgaggcgatc caggagccgt acgacaaccc 2761 gccgatcgag gacctcatcg ccgacggcga gttctacaag atgcagacgt tcgaccagca 2821 cctgttccag ctggtccgcg acggcgtcat cacctacgag gacgcgctca ccgtctccac 2881 caagccccag gacctcaccg tccagctgcg cggggcgggc gtcgtccact gacgccggcg 2941 ggctgcggcc cgggggtgcg gtcggcgggg ctcaggcgtc gtcgtcgggc aggccgagcc 3001 agcggtgcca gccgccgtgc aggacgagcc aggccatgag gccgtacccc gcctgaccag 3061 gcgtgcgccc gtcaccgccg gcgaggtccg tgagccactg ctcgtggtgc acgagcgggg 3121 tgaacgtgtc gacgtagggc acctggcggc gccgtgcgac gtccccgaag gccgcggaca 3181 gctcggcctg gcgctcgtcg tcctcgcgcg tcgacggggg aggcccgacc acgaacgtgt 3241 ggatccggcg ctgctccgcg acgtcgagca cgttcgccag gttgagcctg ctgcgggcca 3301 gggagatgcc gccggccagg tccgcgtggc tcagccccac gacgagccgg gcctccacgg 3361 ccgggtcctg gcccaggcgg gtcgccgtct cggcctccca gcgggcgctg agcgccgtcg 3421 tggtctcgcc cgggacggcg aggggcatga cgagggcagg agggtccgcc ggggtgcggg 3481 cggcgacacg gccgacccac ccgagggcct tggggtctcc gtagccggcg acgagctcgt 3541 cgcccacgac gcagatgcgc agcgcgcgat ccgtcaccgt tcctcctgtc ggtcgtgcgg 3601 ccagtctggc gcagacgcac gacggaccga cggcggcgcg ctgggcgccc gcccccggcc 3661 cgcggtggtc atcggtcgaa cgcggcctcg acgagggcga cctgctcgcg ggcgtgcgtc 3721 ttggccgacc cggcggcggg ggaggccgag gcggggcggg acaccagggt cacgtccttg 3781 cccagcacct cgcgcagccg cggggccagg tggctccacc cgccctggtt cgccggctcc 3841 tcctgcgccc acacgacctg ggcgtcgccg aacggcgcga gcgccgcgtg cagggcgtcc 3901 tcgtccagcg ggtacagctg ctcgaggcgg accagcgccg tgcggtcgtc gccgcgcttg 3961 acccgctcgg ccaggaggtc gtagaagacc ttcccggcgc tgaggacgac gcggtcgacc 4021 gacccgtggc gctcggcgtc caggtaggtc tcggggatca ccgtgcggaa ggtccccgag 4081 gtgaagtcct ccacacccga ggccgcggcc ttgagccgga gcatcgactt gggcgtggcc 4141 accacgaggg ggcggcgcgg ccggtcgtac gcctgccggc gcaggaggtg gaagtacgac 4201 gcgggcgtgg tcggcatcgc gacggtcatg ttgtcctccg cgcagagctg gaggaaccgc 4261 tcgacgcgcg cggaggagtg gtcgggcccc tgcccctcga acccgtgcgg caggagcagg 4321 acgacggacg agcgctgtcc ccacttctgc tcggaggacg agatgaactc gtcgatgatc 4381 gtctgggcgc cgttgacgaa gtcgccgaac tgggcctccc agagcacgag ggcgtcggga 4441 cgctcgaccg agtagccgta ctcgaagccg agggcggcga actccgacag cgaggagtcg 4501 tacacccaga acttggcctg gtcgctggcc aggtacagca gcggggtcca ctccgcgccc 4561 gtccgccggt cgtgcaggac ggcgtgccgc tgcacgaacg tcccgcgccg ggagtcctgg 4621 ccggccaggc gcacgggggt gccctccagg agcagggagc cgaacgcgag gagctcgccg 4681 tagccccagt cgatcccgcc ctcgcgcgac atctgctcgc gcttggcgag gagctgctcg 4741 agcttggggt ggacgctgaa gccctggggc gggcggacgt gggcgcggcc gatgcggtgc 4801 aggacctccg ggtccacggc cgtccgccag ccgaccatgg tcccggcgtc ctcgagctgg 4861 gactcgggct tctccagccc ggcgaccggc tcggcgctgg cgggcggcgt gacgccgctc 4921 tcgcgcgtct cggtgaagac gcgctccagc tgcgactggt agtcctggag cgcctgcgcc 4981 gcctcgtcga ccgtgatgtc gccgcggctg accagcgcct ccgtgtacag cttgcggacc 5041 gagcgcttgg cctcgatgag gttgtacatg agcggctgcg tcatcgacgg gtcgtcgccc 5101 tcgttgtgac cacgacggcg gtagcagacc atgtcgatga tcacgtcgcg ggcgaactcc 5161 tcgcggaact cgaacgcgag ctccgccacc cgcacgcacg cctccgggtc gtccccgttg 5221 acgtggaaga cggggacctg gagccccttg gcgacgtcgg tcgtgtagta cgtcgaccgc 5281 gacgacgacg ggccggtggt gaacccgacc tggttgttga cgatgacgtg cacggtgccg 5341 ccggtgcggt acccccggag ctgggcgagg ttgagcgtct cgacgacgac gccctgcccg 5401 gcgaaggccg cgtcgccgtg gatgagcacc ggcaggacgg agaagccgtc cccgcccagg 5461 tcgatccggt cctgcttggc ccggacgacg ccctccagga ccgggtcgac cgcctcgagg 5521 tgcgaggggt tggcggcgag gtagacgccc gtggtcgcgc cggtctccgc ggtgaacgtc 5581 ccctcggtgc cgaggtggta cttcacgtca cccgagccct ggacgctctt cgggtcctgg 5641 ttgccctcga actcggcgaa gatctggccg tagctcttgc cggcgatgtt ggcgagcacg 5701 ttgaggcgcc cgcggtgcga catcccgatg cagacctcgt ccagaccgct ctccgccgcg 5761 cgggacagca cgccgtccag cagcgggatg agggactcgc cgccctcgag ggagaaccgc 5821 ttctggccga cgaacttcgt ctggaggaac gtctcgaagg cctccgccgc gttgagccgg 5881 cgcaggatgc gcagctggtc ctcgcggggc gtccgggcgt agcccgcctc gagccgctcc 5941 tggagccagc ggcgctggcg cgggtcctgc aggtgcatgt actcgatgcc gatcgtccgg 6001 cagtacgagt cgcgcaggag cccgaggatc tcccgcaggg tggccttcgg cttgccggtg 6061 aagccggcgg tggggaacac gcggtccagg tcccacagcg tgagcccgtg gttctggatg 6121 tcgaggtcgg ggtggcggcg ctgccggtac gccagcgggt cggtctccgc catgaggtgc 6181 ccgcgggacc ggtaggcgtg gatgagctcg gcgatccggg ccggcttggc ggcctcggtg 6241 tccgcgtcca ccgtgttgtc gcggacccag cgcaccggct cgtagggcac gcggacggcc 6301 gcgaagacgc ggtcgtagaa gccgccctca ccgagcagct tcgcggcgac gacccgcagg 6361 aagtccccgg actgcgcgcc ctggatgatg cggtggtcgt aggtcgaggt gagggtcagg 6421 accttcgaga cgcccagccg cgcgagctgc tcgtccgagg caccctggaa ctcggccggg 6481 tagtccatcg cgccgacgcc gacgatcgcg ccctggccgg ccatgaggcg cggcaccgag 6541 tgcacggtcc cgatggtccc cgggttggtc agcgtgaggg tggtcccggc gaagtcgtcg 6601 gtggtgagct tgccgccacg ggcgcggcgc acgacgtcct cgtacgcggc gacgaactga 6661 ccgaagtcca tccggtccgc gcccttgatg ctcggcacga gcagctgtcg ggagccgtcc 6721 ggcttcgcca ggtcgatggc gaggccgagg ttcaccgcac ccggctggac cacagcgggc 6781 ttgtcgtcga cgagcgtgta gccggcgttc atctccggca tctcggcgag ggcctcgacc 6841 acggcatagc cgatgaggtg cgtgaaggag accttgccgc cgcgcgtgcg ggacaggtgg 6901 ttgttgatga cgatccggtt gtcgaccatc agcttggccg gtaccgctcg gaccgacgtc 6961 gcggtcggga ccgcgaggct ggcctccatg ttctgcacga cgcgggcggc aggcccgcgg 7021 agccgctcga cggcgggctc ggggacgtcg cggtgctcga ggcgcgacga cggctgctcg 7081 gcgtaggggg ccgtcgcggg ctgggcggag gccaccggcg cggtgctcgc gtcccgggcg 7141 ggctcgcggg gcgtcgtcgg cgtggcctgg g //