LOCUS       AV359441                 231 bp    mRNA    linear   EST 06-SEP-2005
DEFINITION  Mus musculus egg female in vitro fertilized eggs cDNA, RIKEN
            full-length enriched library, clone:7420438E06, 3' end partial
            sequence, similar to ddbj:X99712 M.musculus mRNA for HIRA protein.
ACCESSION   AV359441
VERSION     AV359441.1
KEYWORDS    EST; 3'-end sequence (3'-EST).
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 231)
  AUTHORS   Konno,H., Aizawa,K., Akahira,S., Akiyama,J., Carninci,P., Endo,T.,
            Fukuda,S., Fukunishi,Y., Hara,A., Hayatsu,N., Hirozane,T.,
            Hori,F., Ishii,Y., Ishikawa,T., Itoh,M., Izawa,M., Kadota,K.,
            Kagawa,I., Kai,C., Kawai,J., Kikuchi,N., Kojima,Y., Koya,S.,
            Kusakabe,M., Matsuyama,T., Miki,R., Mizuno,Y., Nakamura,M.,
            Oda,H., Okazaki,Y., Owa,C., Ozawa,Y., Saito,H., Sano,M., Sato,K.,
            Shibata,K., Shibata,Y., Shigemoto,Y., Shiraki,T., Sogabe,Y.,
            Sugahara,Y., Suzuki,H., Suzuki,H., Takahashi,F., Tateno,M.,
            Tominaga,N., Tsunoda,Y., Watahiki,A., Watanabe,S., Yamamura,T.,
            Yasunishi,A., Yokota,T., Yoshiki,A., Yoshino,M., Muramatsu,M. and
            Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-OCT-1999)
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   5
  AUTHORS   Sasaki,N., Izawa,M., Watahiki,M., Ozawa,K., Tanaka,T., Yoneda,Y.,
            Matsuura,S., Carninci,P., Muramatsu,M., Okazaki,Y. and
            Hayashizaki,Y.
  TITLE     Transcriptional sequencing: A method for DNA sequencing using RNA
            polymerase
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 95, 3455-3460 (1998)
REFERENCE   6
  AUTHORS   Itoh,M., Kitsunai,T., Akiyama,J., Shibata,K., Izawa,M., Kawai,J.,
            Tomaru,Y., Carninci,P., Shibata,Y., Ozawa,Y., Muramatsu,M.,
            Okazaki,Y. and Hayashizaki,Y.
  TITLE     Automated filtration-based high-throughput plasmid preparation
            system
  JOURNAL   Genome Res. 9, 463-470 (1999)
COMMENT     Please visit our web site (http://www.osc.riken.jp/) for further
            details.
FEATURES             Location/Qualifiers
     source          1..231
                     /clone="7420438E06"
                     /db_xref="taxon:10090"
                     /dev_stage="egg"
                     /mol_type="mRNA"
                     /note="cDNA library was prepared and sequenced in Mouse
                     Genome Encyclopedia Project of Genome Exploration
                     Research Group in Riken Genomic Sciences Center and
                     Genome Science Laboratory in RIKEN. Division of
                     Experimental Animal Research in Riken contributed to
                     prepare mouse tissues. 1st strand cDNA was primed with a
                     primer [5' GAGAGAGAGAAGGATCCAAGAGCTCTTTTTTTTTTTTTTTTVN
                     3'], cDNA was prepared by using trehalose
                     thermo-activated reverse transcriptase and subsequently
                     enriched for full-length by cap-trapper. Second strand
                     cDNA was prepared with the primer adapter of sequence [5'
                     GAGAGAGAGATTCTCGAGTTAATTAAATTAATCCCCCCCCCCCCC 3']. cDNA
                     was cloned into the XhoI and BamHI sites. Vector: a
                     modified pBluescript KS(+) after bulk excision from
                     Lambda FLC I. Cloning sites, 5' end: SalI; 3' end: BamHI.
                     Host: DH10B."
                     /note="clone_lib: RIKEN full-length enriched"
                     /organism="Mus musculus"
                     /sex="female"
                     /strain="C57BL/6J"
                     /tissue_type="in vitro fertilized eggs"
BASE COUNT           71 a           22 c           55 g           83 t
ORIGIN      
        1 atggagtttt tgttggttga tcaggatatc cctaaaagtt acttggacat tggtcacttg
       61 taggaaattt aaattttaat tatgacagct acactgaaaa aaaaataatt gtactgaaat
      121 taacttgtct tttttcattt ggtttaattt ttaaatgttt gtaaaaagag acactttgtg
      181 tggggggtgg ggtgggacag aggggagggc aatttttttt caaagacgag a
//