LOCUS       AM887555                2840 bp    DNA     linear   PLN 05-MAR-2008
DEFINITION  Arabidopsis thaliana cad gene for cinnamyl alcohol dehydrogenase,
            ecotype Ita-0, exons 1-5.
ACCESSION   AM887555
VERSION     AM887555.1
KEYWORDS    cad gene; cinnamyl alcohol dehydrogenase.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2840)
  AUTHORS   Aguade M.
  JOURNAL   Submitted (31-JUL-2007) to the INSDC. Aguade M., Genetica,
            Universitat de Barcelona, Avenida Diagonal 645, Barcelona, 08028,
            SPAIN.
REFERENCE   2
  AUTHORS   Ramos-Onsins S.E., Puerma E., Balana-Alcaide D., Salguero D.,
            Aguade M.
  TITLE     Multilocus analysis of variation using a large empirical data set:
            phenylpropanoid pathway genes in Arabidopsis thaliana
  JOURNAL   Mol. Ecol. 17(5), 1211-1223(2008).
   PUBMED   18221273
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Arabidopsis thaliana"
                     /chromosome="3"
                     /ecotype="Ita-0"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
     5'UTR           467..562
                     /gene="cad"
     CDS             join(563..654,770..883,1641..1868,1956..2395,2486..2709)
                     /gene="cad"
                     /product="cinnamyl alcohol dehydrogenase"
                     /db_xref="GOA:P48523"
                     /db_xref="InterPro:IPR002328"
                     /db_xref="InterPro:IPR011032"
                     /db_xref="InterPro:IPR013149"
                     /db_xref="InterPro:IPR013154"
                     /db_xref="InterPro:IPR020843"
                     /db_xref="InterPro:IPR036291"
                     /db_xref="UniProtKB/Swiss-Prot:P48523"
                     /protein_id="CAP09012.1"
                     /translation="MGSVEAGEKKALGWAARDPSGVLSPYSYTLRSTGADDVYIKVIC
                     CGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVLEVGSDVSKFTVGDVVGVGVVVGCCG
                     SCKPCSSELEQYCNKRIWSYNDVYTDGKPTQGGFADTMIVNQKFVVKIPEGMAVEQAA
                     PLLCAGVTVYSPLSHFGLMASGLKGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKK
                     EEAIEHLGADDYVVSSDPAEMQRLADSLDYIIDTVPVFHPLDPYLACLKLDGKLILMG
                     VINTPLQFVTPLVILGRKVISGSFIGSIKETEEVLAFCKEKGLTSTIETVKIDELNIA
                     FERLRKNDVRYRFVVDVAGSNLVEEAATTTN"
     exon            563..654
                     /gene="cad"
                     /number=1
     intron          655..769
                     /gene="cad"
                     /number=1
     exon            770..883
                     /gene="cad"
                     /number=2
     intron          884..1640
                     /gene="cad"
                     /number=2
     exon            1641..1868
                     /gene="cad"
                     /number=3
     intron          1869..1955
                     /gene="cad"
                     /number=3
     exon            1956..2395
                     /gene="cad"
                     /number=4
     intron          2396..2485
                     /gene="cad"
                     /number=4
     exon            2486..2709
                     /gene="cad"
                     /number=5
     3'UTR           2710..>2840
                     /gene="cad"
BASE COUNT          857 a          457 c          570 g          956 t
ORIGIN      
        1 aaaaattgat tgtgtcatat atcttttgtc aactatttta tcttattttt ctatggatat
       61 gtatgtatgt atctatgtat gtccaaaatg ttagacaaaa aaccaaaaaa tcatgtccaa
      121 aatttcgtta ggctgccgat atctctgttt ccctttcaac gactatctat ttaattaccg
      181 tcgtccacat tgtttttaat atctttattc gaggttggtt tagttttttt taccaaactc
      241 actttgctac gtttttgcct ttttggtatg gttgtatttg taccaccggg aaaaaaaaga
      301 taagaggttt ggttggtcga gcttactgat taaaaaatat acacgtccac caaatattaa
      361 aacaatatat cccatttttc ctcctctctt ttggtattac attaatattt tattatttcc
      421 ccatttgctc tgtatatata aacatatgtc aatagagtgc ctctacagtc atgtttccat
      481 agacataatc tctcaccatt gtttttatct gcaaaactaa agaaacaaaa aaagaaaaat
      541 cggagaaacc aagaaaaaag aaatgggaag tgtagaagca ggagaaaaga aggctttagg
      601 atgggctgca agagatcctt ctggtgttct ctctccttac tcctacactt taaggttttg
      661 tttcctcttc tcctttcaca agaaaatttg gttttgttat gtagaatttt tatggtttta
      721 ttgaacttgt ttttgttgaa aattgaattt tggttttgtt aatatatagg agcacaggag
      781 cagatgatgt gtatataaag gttatatgct gtggaatatg ccatactgat attcaccaaa
      841 ttaaaaatga tcttggaatg tctaattatc ctatggttcc tgggtaattt cttctctctt
      901 ttcttatctg ccttattttt cagctttatt cttgactggt gtccatgaat ggcgattttc
      961 tttcatctgt taaaaatgga tgttatcgct agacttcaat ttagatccca atcatatata
     1021 aataagatgg tttcagattt taaatggaat tacatctttt taatttattt gaagttatgc
     1081 atagattgtt ggtaaacata agtatattag cacttgtgac tagcttaata atttcaaagc
     1141 gtgctagaga taactccaaa cagtacattt tcaaatgtaa gtaaattgtt tagacatata
     1201 ttttaatttt agataaccta agggcaaaaa caaatattag atcatcttag attgtaaata
     1261 catgaaattc ttatttttaa tggttcagat gagttgatta gtaagtagtt aaccatatga
     1321 tatgtaatat tttgtacaaa tgttattgat atattcttct cggaatttag atacccatta
     1381 tatgatgcat gttgttaaat gacttttgtg gtatgacaga agattttggt ataaagttga
     1441 cttgacatta ttgttaattt gaagataatt gaacgtgcta ctgttacaca tctgacattc
     1501 gtttataacc acacctgtca ctgtttagtc ttctaaatta atatgcaaac aaaaaactct
     1561 gtcaatgtgg gacttgtagg ggtaactgaa atatacgagt aagattccgt aataactaaa
     1621 agtgtaattt tgatttacag gcacgaggta gtaggtgagg tgttggaagt gggatcagat
     1681 gtgagcaagt ttactgtagg agatgtagtc ggagtcggcg tggtcgtcgg atgctgcggt
     1741 agctgcaaac catgcagctc agaacttgag cagtattgta acaagagaat ctggagttac
     1801 aacgatgtct acaccgatgg aaaacctact caaggtggct tcgccgacac catgatcgtc
     1861 aatcaaaagt aagcacacgc acacaccttg tttcacaaga aacacacaga gcatttgttt
     1921 cttcatccac aagtaactta tttttgtttc aaaaggtttg tggtgaagat tccagaagga
     1981 atggcggtgg agcaggctgc accgctactc tgcgcgggag taacggttta tagtccgttg
     2041 agccacttcg gtctaatggc gagtgggctt aaaggaggga ttctagggtt aggtggagta
     2101 gggcacatgg gtgtgaagat agctaaagca atgggacatc atgtgactgt gataagctca
     2161 tcagataaga aaaaagaaga agctatcgaa catttaggag ctgacgacta tgtggtgagc
     2221 tctgatccag cagagatgca aagactcgca gattcccttg actacatcat tgacaccgta
     2281 ccggtgtttc accctctcga cccttacttg gcttgtctta aactcgacgg gaaattgatt
     2341 ctcatgggtg ttatcaacac tcctcttcag ttcgtgaccc ctctcgtcat tcttggtcag
     2401 tactatttct tgcgtttaaa tcatatctag ctaataacaa caaaattcaa tagcaaacct
     2461 gatgtttttt tctatatttt gacagggagg aaagtgatat cagggagctt tatagggagc
     2521 attaaagaga cagaagaagt gttggctttc tgcaaagaga aagggcttac gtcgacgatt
     2581 gaaactgtga agatcgatga gcttaacatt gcgtttgaga ggcttcgcaa gaacgatgtt
     2641 cgttacagat ttgtggttga tgttgcagga agtaatctgg tggaggaggc tgcaacaact
     2701 acaaactaaa gagggcaggg cacattgata catgaacgaa aaattgtaac gggcttgttt
     2761 gtccaacgaa tgttttgttg ttgtcttttt caaatggttc aaacacgaat gctttggctt
     2821 tatttttttc taatcaatgt
//