LOCUS AM450441 9120 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X137958.3, whole genome shotgun sequence.
ACCESSION AM450441
VERSION AM450441.1
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 9120)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..9120
/organism="Vitis vinifera"
/chromosome="19"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS 5002..5376
/locus_tag="VITISV_033928"
/product="hypothetical protein"
/note="GO:0015074"
/note="partially similar to EMBL:AP008212"
/db_xref="InterPro:IPR013103"
/db_xref="InterPro:IPR039537"
/db_xref="UniProtKB/TrEMBL:A5B8L0"
/inference="similar to DNA sequence:EMBL:AP008212"
/protein_id="CAN65358.1"
/translation="MNSMYMNGVWDLVELPHGCKPVGCKWVFNTKRDSNGKIERYKAR
LVVKGYSQREGIDFKETFSLVSTKDSFRVIMAIVAHFDLKLHQMDVKTAFLNGDLDEK
VYMEQPTAFCRSWKGRFSLQAQ"
BASE COUNT 2910 a 1256 c 1739 g 3210 t
ORIGIN
1 atggaagtca taaatttaaa attgaacgat gttttttaac ccttcaatat ccattgaaaa
61 accatcaaaa gatacatgaa tatgaattta ttataaaaat atatataaat atgaatttac
121 tattaattta tttattttaa aaattattat aaatatgaat ttatttatta tcaactataa
181 atgcatatga atttattatt aatttattaa tataggatak ttactccttc aatgtaaaat
241 attatatttk cattttctta tcaaatataa aaattaaatt ttaaatataa atttattata
301 aaattaatga attgattatt aatgtattaa tcttatttat atcaaataga tatcaatatt
361 tactataaat atattagagt cataaaattt aaaataaaat atacatgaat atgaatttat
421 tataaaaata catgagtgtg aatttattta ttatcaacca tatatgtata gaaatttatt
481 attaatttat taatacaagg tagttactag ttcaatgtaa aatattgtat ttgctttttt
541 tttttataaa aatataaaaa ttatgttttg ctaataacgt aatacgtttc tcattttaaa
601 ttgattttaa atcatcaaaa taatgtaata aatttatttt tattttatta gtaactacta
661 attacagatt ttgaaaaata aaactcttaa gttgtaaaat acaaattgaa atattatcca
721 aaagttaggt catgtttaag gaaatacaag aagggtttgt tggaattttt atgtgtggac
781 ttacataatc aatttgataa tatcataaat cggtgttaat ttaatttttg cattgtggtc
841 cataatggga ctgaacacat attgttgctt gattttttat aagctcaccc taattcactt
901 gactggccca ttaagtcaag tggtccaaat aatgtgtgta atgtgtaata tatatatgaa
961 tttatttaca gatatatata tatatatata gatagataga taggtatatg tgcatttggt
1021 gagactcctc attttcctct cttagagagt actgcacgca cacacactta cacttggact
1081 gaatttttgg ggaggaaagg gaagagctca ttgatcccta attctcgtac catcatgcac
1141 ctggagcaac ttcttggata tcagaggagg aagaaatggt tttccatggc ataaaccaag
1201 gtaaccagtt cattttttgc cattaaatgc atgcttaaat gttaacatgt gatcctatgc
1261 tatttcaatt ctcttcaatt ggtatcaaag taagcatgga tgacatttga gctgcaattt
1321 tgggttattt ttttggtctc tcgttttctg gttatggaag ccattttttt ggggggtttt
1381 tttcatttag tgtttattct tggttttcaa gcccgattga ggttggagac ttgtagagaa
1441 tgttgtttgg agcaaaaccc atctttttta tggttttttg gagctcattt gatgggattt
1501 agaaaattag ggcttatttg gttcttccta ttatgtgttt tttttttttt tgtgcatttt
1561 tgggtttaga tcgaaggatt gatgtttgag gatggaaatc taagtgtttt tgtcgaaaaa
1621 tgagcaaaat tttaggtgga attttttttc tttatttctt ctccagaacc aaggcgtgtt
1681 cagttggaga agaagatgaa caacccttgc tgacgtcatc atgacatcat taaagaaaac
1741 aatttttttt tgttgccttg gtattcttgg attgattatg catatgttag aattattatg
1801 catttgttaa atttgacttt attgggacaa ttattattat tattgttttt atggtataat
1861 ttttatttta taccaataat gttgtccaag gtcaattttg ttaactattt aaatttattg
1921 tggcaataaa taaataacac ttgtgtgatt gcctatcgca attccaagtg tgtcaagttg
1981 cgcaaattaa atatttcagt ttatcatgac aatagtgaac atatatgtgg ttgcctatcg
2041 tgatcctata tgtgtcaaat tgtctttgct aagataattt aacccccact tttagttgtt
2101 ttattgttgt gattactaag atccatacgg atattgtaat tgtcctatca atgataataa
2161 tacttggtag gatgcttaga ttggtgaagg aaattaattg taaattatga accgtactaa
2221 ttttctttgc cttttcggta ataaaataag tacatattgg ttgtgatatt taattagttg
2281 tccttatcgc cgtggaattt tcaaaattcc aagctattgc taaattgaga aattatggaa
2341 agtagcaaag gcataacatt gtaataacat gcatattgtt gaattttgct attttccatc
2401 taccagcaat cctggtattt ctttgcaatt gtctgccatc aaacctctta ctagaaataa
2461 ttttgaagaa tggtttgagt ctttcaacgt gcatatgact ctgcaaaatc tagacttggc
2521 tttgagggtt gatgagccaa gtaagctcac tgatgtgagc tctatagatg aaagatcatt
2581 ttatgaaata tgggagcact ccaataggag ttgtttgctg gtgatgaaat acactatgga
2641 taaatcgatc aaagaatgca tgctaaagac ggaaatggcc aaagacttct tggaatatgt
2701 gaaggccact tataccaaga ttgataaggc agaaatggca acttatttgt tgcttctcac
2761 aactactgtg tatgatggat taggtggggt tagagatcat atcatcaagc taaagcacta
2821 cttcaacaag gcaaatgaga tgaaagtgga gttgggtgaa aattttctaa aatggttgat
2881 acttgagtct cttcctattt cctttgatgc agtgaagttg acttacaatg cttgaaggaa
2941 gaattgactc tgaaggagtt gatgtccatt gtagtgtaac atgaagtctc actaaagata
3001 aatgagactc actcccttac tcttgtgact aaccaagtca gtaatatgaa gaaaaaacct
3061 ccacacaaga attttggggg ctttaaacaa ttcaagagga aagggaattc aaatcaagga
3121 acctccaatg catctgcttc ttctaatgct gcaaagagtg agaaattcaa ggggaagtgc
3181 tacttttgcc acaagattgg ccacaagcag gctgattgct tcaaatttaa aaattgacta
3241 gagaataaaa agaaagatga aattgtggtt ctggttaatt tgaatgcaaa catgattgag
3301 acaaatattg ttgatgttca tgccaattct tggtggttag atatcggtgc cactattcat
3361 gtcactaatt ctttatagga gatgacaaac aaaatgaggt catcaaagca tgaagaatat
3421 gtgtatatgg gtgatggaag caaagtgaaa gtggaatttt ttggcatgat aaagctaagg
3481 ttgatcatag aaagtttttt gttgttacac aatgtggctt tcataccctc acttcggagg
3541 aatctaattt ctgtatcttc tttggataga catggttatt cttttcactt tggaggtgga
3601 aaagtggata tttttagcaa ctcattctta attggcaatg gtgttttgtt tgaaaatctt
3661 tatagtctca gtttgcatca tggttcatta tgtgattcat cttctattaa ttctattgtt
3721 ggttgcaagc gtgctagaat gaatttgagt tcttccatgt tgtggcacaa atgcctaggt
3781 catatttcta ggcaaagatt agagagattg gttaaagatg gtgtgctttc taatcttgat
3841 ttctcagact tcgagacttg tgttgtttgc ttaaagggga agatgacagc aaagaccata
3901 aatgagaaga ttgataggtg tggaagtact ttagacttga tccacacaga tatatgtggt
3961 cctttgacac caattgcttt agggggttat aaatatttca tcacttttat tgatgatttc
4021 tctagatatg gttatgttga actaatccat gagaaatccg actccctaaa tgtgtttaaa
4081 gcctttaagg ctaaggtgra gttgcagttg ggaaagctca ttaaagttgt gaagtccgat
4141 agaggtggtg agtattatgg gagatatgat gagattggac ggaattctag accattcgct
4201 aagtttctat tggaatgtgg cattgatgcg agatatacaa tgtcagacac tcctcaacag
4261 aatggggttg cagaaaggag gaatcacaca ttgttagata tggtaaggtg catgttgtct
4321 aatttctctt taccagaatt tctgtggggt gaagccttaa ggactatggc atatattttg
4381 aatcaagtgc ccagtaagtc tgtgcctaag acaccttatg agctatggtc aggaaagaaa
4441 tcaagccttc accatttcca tgtttgggga tgtaaggctg aggttagacc ctataaccca
4501 cagtaaaaga aacttgatcc taaaaccatt agtagtttct ttgttggcta ttgcattgga
4561 tcaaggggtt ccagatttta ttgtccatct cataccaccg agatcattga gtcagatagg
4621 gttgtatact ttgaggatga agttaatgct gatccaaatt ttgtgtctcg tgagatacct
4681 tttggagaag agcatgttgt gattcctttt cctacatctc atgttccaaa tgtggatgtt
4741 cctattgtcc aacagttagc cactaatcaa ggagagcatg gtgatcaagt ggaatctggt
4801 cttcctatag atgatactgt tgttgatgag gttcctttga gaagatcata gagggttcgt
4861 aggccaacta tttcagatga ttatatggtt tatttgcagg agcatgagta tgatggttat
4921 gatgcttttg atccagtcac ttatcaagaa gcaattcatt gtcctcaatt cacttcttgg
4981 aaagaagcca ggaatgatga aatgaattct atgtatatga atggtgtttg ggacttggtt
5041 gaattgccac atggttgtaa accagttggg tgtaagtggg tctttaatac caaacgtgat
5101 tctaacggaa aaatagagag atataaagct agacttgtgg ttaaaggtta tagtcaaaga
5161 gaagggattg atttcaaaga aaccttctca cttgtgtcga ccaaggactc ttttagagtg
5221 attatggcca tagtagctca ttttgatttg aagctacatc agatggatgt caagacggct
5281 ttcttgaatg gtgatttgga tgagaaggtg tatatggagc aacctactgc tttttgtaga
5341 agttggaaag gaagatttag tttgcaagct caataagtca atttatggtc ttaaacaggc
5401 ttcgaggcag tggtatctga agtttgatag gattatcacc caaaatggtt ttaaagataa
5461 tacaattgaa aaatgcatat atttgagggt cagtgggagt agttacatat ttcttgtttt
5521 atatgttgat gatatactac tcgcatcaaa tgattctgac ttgttaattg agacaaagca
5581 catgttgtca accccttttg acatgaagga tcttggtgag gcttcttatg ttttgggcat
5641 aaagattctt cgtgataggg ctaatggagt gcttaaattg tctcaaagaa cctatattga
5701 gaagatattg aagagcttca atatacacaa ctatagatct tctaaagcgc caattgtgaa
5761 gggtgataag ttttcaaagg ctcagtgtcc tcaaaacgat gatgaaagag aggaaatgag
5821 gaccattcct tattcatctg tggttggcag ccttatgtat gctcaagtat gtatacgctc
5881 taatattgct tttgttgtgg gcatgttggg aaggtacttg agcaatcttg ggagtcaata
5941 gtggaaagtc gctaagaagg tccttaggta tttacaaggr actaaggact taatgttgac
6001 atattggcac accaacttac ttgatgtagt taggttttgt gatgctgatt ttgytggctg
6061 catagatgat aagaaatcca ctacatgcta tatttttatg atggtagaag gagccgtatc
6121 ttagaaaagt gtcaagcaga cacttacagc atcctcaact atagaggtag agtatgtggc
6181 atgttatgag gcttgttttc atgttatgtg gatgcagaat tttatttcag ctttgggagt
6241 tgttgactcc atttctagac cgttgaaatt attttgtgat aattccgcag ctgttacttt
6301 ctctaagaac actaggagta tttctctctc caagcatatt gatgtaaagt tctattttgt
6361 taaggagaaa gtggcagaga ctcttattga tattgaacac atgtccacaa aaagtatgtt
6421 ggcggatcca ttaacaaaag gcttacccat aattgtgttt caggaacatg tatctcaaat
6481 ggggttattg gaagcctagg ttgtattaag ttagtgggag ccacttttgg tattataata
6541 ctatgttatt gttggaagga ttgctattat tgtatatttc cctatgaatc aagcaatgaa
6601 gcatatatga ttgcttttga ttatttgttt ttgatgagat tctatgggac atttatttat
6661 gattatgtat gtgttgtgat gtttgattat gtagtccaag tgggagaatt gttggaattt
6721 ttatgtgtgg acttacataa tcaatttgat aatatcataa atcaatgtta atttattttt
6781 ttgcattgtg gtccataatg ggactagaca catattgtta cttgattttt tatgggttca
6841 ccctaattca cttgactggc ccattaagtc aagtggtcca aataatatgt gtaatgtgta
6901 atatatttat gaatttattt acatatatat atatatgtgt gtgtgtgtgt gtgtgtgtgt
6961 gtgtgtgtgt gtgcatttgg tgagactcct ccttttcctc tcttggagag cactacacgc
7021 acacacactt gcacttggac tgaatttttg gggaggaaag ggaagaactc attgatccct
7081 aattctcgta ccatcacgca cctggagcag cttcttagat attagaggaa gaagaaatgg
7141 ctttccatgg cataaaccaa ggtaactggt tcattttttt tccattaaat gcatgcttaa
7201 atgttaacat gtgatcctat gctatttcaa ttctcttctg ggttgccctt aggtttggat
7261 tttcagtgac acaccctctt ggtaacggta ttctggtgcc tctaaaagtc aagttgtaaa
7321 tgaaatcttc ggatctcatt atcattgtat gttggatgaa aaccctgaag gaggaggaga
7381 actagatttt tttattataa taaattggat aaggaagtta acttgggaag agtgggttgg
7441 aagttaaaaa gttagtcaaa catggcatgg aagtggggag ggtaaagagg caccttcttt
7501 aatgactttt caccaaattc atggcaacat tatctaatga tggagttcac cgaagaggcg
7561 gtttgcagtg tagaaatttg gtacttgctt gtgagtcaga ttcttggatg aatgtcgtca
7621 tttttctagt gttgtgcact agtcgattct tatccacatc aattgttttg ggattagctt
7681 gttaagtata gtttctatag acaaataatt tttacattcc ttttgtgttt tatttgagac
7741 ataagattaa tgtttagagc gaaaaaaact ttcaaattat aataaacttt gaatccaaca
7801 taagaaaatc cataaaatta tataagattg taaaaagagt attattaatg taaaatatac
7861 agaatagaac aaacacaact aaaacgaaaa aaaaaatgaa aagaatggga aagtgtattg
7921 tgtatcaaaa tcagactaat catagttaaa caatattata atctatttaa atttctacaa
7981 aaggtggaga cttcattggt caccatagaa gtttggtaat gtttatcact ttcgacttct
8041 ccaaaataag tgttgctcca atctttgtct attccaactt gtgttttttt acaacatgtt
8101 tccagaaaat agatcttgaa ttcttcatat ttaaaattct ggtttctaac ccacattgtc
8161 aatgtgaaag actttgttct tgctctgcat tcctccaatt ggttcatttt aagtgctttc
8221 ttcaaaaggt caacatccaa ttctactttc tccaaaccaa aaaactttaa ctactaaaaa
8281 ataataattc tagaatggtt cacaacaaaa ataacataaa tatttattca aacaaaatta
8341 ccaaatcatc taaaataaaa actaccattc cttagaagta taatgtcttt gggtttccaa
8401 aatatttaca actttttaag aataaagtcc ccttgcacct agtttcacat catgggctag
8461 ataataattt ttctagcgag atatatcgca tgattcctct ctccttcgat gcctcatgca
8521 attttctgca actacaattt taaatttgaa gattagtctc tatttataat atagtcatat
8581 atctatatac atacaaaaaa aaaaaaaaat caaaggcttg atgcacacca ttttctggca
8641 ttgaagaagt tcgttgatga tgtttttgca actcaaatca tgatatcaac caacatttct
8701 attagaagac actaaagagt gtggcaaatg agaggattct tcatttctca aaacgcaaag
8761 agatgaccta atgcaatttc catatgggat ccgttgcaac tccctcacca agcttgaaga
8821 aaaagaaaag aagtgggtaa cgacgtctaa cgggaaaaac acaatttaaa ggtgattagg
8881 tgcatgaatg aagccattat gattggatga gttgcagttc atgaattcat ttaaatttta
8941 atttatttaa taattaataa tatttaaaac aataataaat ataaaaatta cttaatgtgg
9001 atgaacaaat tagatataaa aaaatttaat atgatcaata aagtttaata ctcgagaata
9061 aaatattata taaataaatt aaattaaaac ttaaaaaaat atttaattta gatttcaatt
//