LOCUS AM448101 11197 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X171513.6, whole genome shotgun sequence.
ACCESSION AM448101
VERSION AM448101.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 11197)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..11197
/organism="Vitis vinifera"
/chromosome="14"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS join(7111..7561,7823..8001)
/locus_tag="VITISV_036935"
/product="hypothetical protein"
/note="GO:0008270 GO:0046872 GO:0003676 GO:0003677
GO:0016787 GO:0015074"
/note="partially similar to EMBL:AP008207"
/db_xref="UniProtKB/TrEMBL:A5B6C0"
/inference="similar to DNA sequence:EMBL:AP008207"
/protein_id="CAN60994.1"
/translation="MFDDELMEKAHSAILLCLGNEVLREVVEEDTTTKLWLKLESLYM
TKSLTNLLNLKNWLYTLQMKEGTSTIKNHLDEFNKTIMDLRNIDVRIDDENQTIILMC
SLSNSYEHFLNTMVYGRDTIYIENVRAALNSRELKNKVFKSREDDSSEGCSYHMSPNR
NWFSTYQLIDGGKILMGNDVACKVIGIDIIQIKMQGAIIRTLIDVRHVP"
BASE COUNT 4089 a 1340 c 2065 g 3677 t
ORIGIN
1 cactaatgaa taaaaatgac aaatcataca cytaagaaaa aaaaaaaaag raagctaatt
61 acatgctaaa ataaaatcaa ggttaattca catgcaactc aaaactaaaa atcaatctaa
121 tacaactaaa caatccaaaa aaaccaaaat catgcaawtt aaaaaaaacg aaaaatcaat
181 cccatgacca caaaaataaa aattcaattt catgaaatta gaaaataaaa tgtcaatcac
241 atgcatatct aatatatata tatatatata tatatatcaa tcatgtgtat caagaatcaa
301 aatgtcaatc acayacaatc aaatatcaaa atatcaatct catacratca aaaataaaaa
361 atcaatccaa tacttaatag taaaaaaatg atgcaataga aaaacaaaac caaacataaa
421 tgcactaaaa atcaacaaaa ataaaacaaa atcctaaact aaaatcagag gtcaatgaga
481 aatcacatta ggtagaccac caatggagac tcgataaaaa agcttggaaa agaatcctaa
541 gtgcaaatga ggaagcataa gatacaagag ggtaaacatt ggaaaacatg tgccaagagg
601 acaaaatgga gggtctatag gtagtgtact atagtctcaa atagattgcc taagcttata
661 aaccaactat gaataaatca tctacttgca aagaacccat gactttgatc ttccatgcaa
721 cttctaatgc acaaagtcat gtagaatgca taagatgata aacttgaatt ctcaacatat
781 ataatgcata aattagagag agaaaggaga accacaatta taatataaat attaatgaat
841 tctatctatt gttacatcat gtcatgcttt taagggctct atctcaacat aaactagtta
901 atcaatcata ggaaagactc aatcctcata tataagaggt ggttagagtt gagatcatca
961 agttattata tattagaata atttatctaa atttatttgt agttgtgtta gtctaactcr
1021 gtaattccaa aaagaatgag attattgtgg tcatatgaga aaagggaaat gttatatcaa
1081 caagattaac tattggtttg agagtttgta taaactattg gaagttcaat gctatgataa
1141 agaaataaca ttttcctttt caattttgga ttagactttg gagaaagtag ttgagtataa
1201 tattattttc tagaatgata ttcaagttat ttccaaattg atactacact aaaggatcaa
1261 gacaagatga tatttacatg tctttttaga gcttattgtc acaagatgct tcaaatgacc
1321 ctccccatgg gcttatatag gaggagggaa gcttctggag actcctggag ccatctacac
1381 taagccattg gtgggaagag tgtggaaggt tctaaaaatg cctagagatg tccacacatc
1441 tctacactat gggggaaggc atgggaagag tccaaagctt tctagagact tctaggaatc
1501 tcttgtatgt tcttgtacat agggttgtac atagaatagg gtaggatgtt ctagaatatt
1561 cttgatttgt aagggaccct ccaaggttct agagagttcc cttggtgctt ataaataggt
1621 gagggccyca tttggccaaa gaccacccaa atcacttcct aaccaagcaa gtgagcttcc
1681 aagcacttgt aaaagcttct ttgagtaata aagagctttc attctttaag gaatcgccta
1741 ccaagcttct taagcctttg agtcgcgagt gtcttagccg agcaagctaa gcattggrga
1801 tcaaggctga cttagcaaga tcaagcgtct tgacttgcct aagtgccgca cgagcttagt
1861 gaacgactaa gtccgtgama ttatgcttat aaaagaaaat tgtttgggtt atgtaattca
1921 ttgacaacct cttagaggtg catgaccaat aatttctcta atttttagaa aagacaatgg
1981 aggtattttt ggatgatatc accatctttg ggattacatt tgagtaaatt cttaaaaaac
2041 ttatatcaag tgttacaaag gttagtgttg aattggaaaa aatgttactt catggttaat
2101 aagaaaattg ttttgggaca tgttatattt aagaagggga ttgagataga taaaataaag
2161 atttaactta tttcaaagct ttagaatcta tctatagtca aggagtaaag caattccttg
2221 gtcctatgag atttaatatg taaatttata aggttatttt twcaaaaata gcacatcctt
2281 tgtgtgctct attgttgaag aaagatgaat caagtggagt actgaatgta caaaagaatt
2341 tgaagtgtta gaaaaagaaa ttgacatttc cagtaatggt gggatcattt aattagagtc
2401 tattatttga attcatgtgt gatcactatc tagctatttg agtttttctt gtataaaaga
2461 aagaaagaaa ttcttttata atgtactatg tgattaagat gatgaatttt gcataaaata
2521 actacactac agtagagaag gaactcttag caatggtatg tgccctcgat aaattcatat
2581 caaacttgat gagcacttcc atagtggtct tcactgatca cttgactttt aaacatcgat
2641 tagagaaaaa aagataccaa aacaaggctt atgctttaga tttttttgtt tcaagagttt
2701 aatattgaga ttagagataa gaaaagagtt aaaaatgtta tagttgacca tttgtcaaga
2761 atcattgttg aagtctagga agaagagttg attaatgaga atttccttaa aatgcattga
2821 tgattttgag aaagcttttt tagtatgcaa acattgttaa attacctagt cactagatag
2881 attcttatag attgtagtat ggaagattag agactctttc tatcaaaatt taaacattat
2941 atttaggatg atccaatatt tgtatgatta ttaccatgat caaatcttta cgagatgcat
3001 tctagaggat aagacttagg cttttttaaa aagatgtcat gatgaggctt gtgatwgata
3061 tttttcttca aagaaaacaa ttgcaaagat gttgtaatat aggttttatt agcactatgc
3121 atgagagtaa attaagagtt tgaaaaatgt tagaatttgg gctcaattag caaaaagatg
3181 gtgtatcctt ttaatatatt tttaatggtt gagatttagt attattgtgg tattatgtaa
3241 tgacctaaga ttattaaaag ctaatataag ttgtttagtc ttttaatgag gattaacaac
3301 tcaattaatg agttgattag ttaattaatt aaaaaacaga ttagttagat aactagcatg
3361 ttaaaatagt agaaaagtag cttaaagatg gttaataaca atgaaatttt ttgcaacacc
3421 aatgttatgt aaattggcag cttagtaaat tatttgctta attttgttta gttgaaaatc
3481 caactaactt ccctatttta cttaactata gtagaagcct tcttcaagat tcatttaaaa
3541 ttggaacatg tgttgaaaat caataaatgg gtggacgtat attgttttag gattaaacat
3601 ttgacactag tttcatgaag tcaactaatt attagtttaa aatttttctc taatataaat
3661 ttcttagctt gaaagagagg aaaataggat aagcattttt aaaaaaaaat aagaagttac
3721 aatgataaag aagtaatggc aaagatttga aatgaaagaa ttactcaatt tctaaatagg
3781 tagagaagtt tttatttaaa aaccttgttt ttagtttctt aagaaaaaca tgtataagag
3841 tatttaatgt acatcatgtt tttgaaatga tttgatatat gaaattatgt ttgtacatga
3901 gaatcttgat tatacgtgac atttgaataa aataaatgtt gaatgaaatg attgaaactt
3961 gtttcttatg attataatat actttactac aataaaatat actgtatttt gttgaaacta
4021 acttgaatat gtatgatgtg cagtatggag agtgctgaag gcacttaaaa aaacaaaaga
4081 aaaaaccaat tttaaggcac catgatgggt gctaaaaaaa acatgtataa gagtatttaa
4141 tgtacatcat gtttttgaaa tgatttgatg tatgaaatta tgtttgtaca taagaatctt
4201 gattatacat gacatttgaa tgaaatgatt gaaacttgtt tcttatgatt atgatatact
4261 ttactacaat aaaatatgct ttattttgtt gaaactaact tgaatatgta tgatgtgcag
4321 tatggagaga gttgaaggca cttaagaaaa gaaaaaaaaa accaatttta aggcaccatg
4381 atgggtggtt tgaaaaaaat aataataagg gagaacggtc cttgggaaag tctcaagcaa
4441 aactatggta aagtaccctg aggtgaaata cctaaaaata tccctaaaaa aatccatgca
4501 tagatgtacg aaggggcatg ggcacatgtc cctacgtgag aaccccaaaa tttacaagta
4561 catatacttt aggtacatat atcaaaagct tcaaggaagg tgtatgatgt gttaactatt
4621 gaataatatg aacatatttg tatatgttgg atggaaactt atgtttcaat gaaagatttg
4681 ttctatgata tgcaaagtgt tttaaaaaat tatttataaa attttctttc attactaaac
4741 ctttttctat tgagttgtag ctcttccttt cttataaaag tatttttcaa accaagcaaa
4801 actttcttat gcgattaaga gagcttgtgt tttatgtatt ttgaatgtaa ttggatgttt
4861 tggtattgta tagtcttcta aaataaaaag aaaaaagaca tcattatttt tagagtttgg
4921 gtggaataaa tgagatgtaa atttttacca ttttaagtta agtctggttt gatatcgtta
4981 aagtttgtat atcaattaaa tgtgtgaaaa tttcatagat tagtatagca taatttaaaa
5041 caaaaaaaat ttcaaaagat cctcaaatgt ggaaagataa attacaaatc ttaaacaaag
5101 ttttggatgc ataaaaaaaa agtgtgataa gttaaattgt aagggaaaaa agtgcatagg
5161 attcttgttg tcaagtgtac aaaaataatt taaaggaaaa atgagatgca caagaagttg
5221 aacaaaagat tgcacaaggt ggtgtgtagg atgtttgaat aaaaaaagtg tatagatggt
5281 tggagtaaaa gcggtgcata aaatgtttac agaaaattgt gcaagatttt atctaagagt
5341 tatgcaacta aagtaagtgt gcaagagggt taatgcatag gatgwgtttg gtagtacata
5401 aaatccattt taaaggtaag aagtacaaga tgtttaaaag aygtgtacaa gattttaact
5461 raggaagatg cataatttaa gtggtgtgta ggatragtgt gatgtgccac tttttaacac
5521 ctttacttta ttcactctca acatctcatc atagttttat tcttataact atatttacaa
5581 ttatatttgc attaaaagaa gtgtgtaaga ttttaactaa gggagttgtg caatttgagt
5641 ggtgtactag atgggtgtgg tgcataattt ctcaacacta tagcattgtt tcactctcaa
5701 caccttaaca tagttttatt ctcakaatta tgtttacaat tatacttrca ttttaaacat
5761 ttaagtaaat gcccttatat attattttat catttgaatt gaatataaaa atacccgaat
5821 acccccattt attttaaatt tacaaagtaa ataatgaaat aactcccatt tggatacaat
5881 aaaaatgcct tcaaaatcta aatatttcaa gtaaattaaa acttgatttt tcaatttgag
5941 ttataaattg atagctttta ttgaattcat tcaaaaaaaa agttcactta aataaaatta
6001 tcaaagataa aaatttagaa caattatttt aagtattacc aacatagaaa caacaaaatc
6061 tataactttt tgtctcaaat tttgaaactt ttaaaaatga cctattttcc gtagtaaaat
6121 ttttgcatgg tcaagacatc atacaaggca catttgaaaa ttcattattg gacaatgtaa
6181 tatatacttt taaataaaaa gaaatttaaa attataaatc ataaaataat aaaaaaatta
6241 attatattca ataattagta aataaatatt gggaaaaaaa atctttgggt tgcaagagta
6301 taatagaact agaatttttg aacatgaaat ataaatgatt aacacactat attacgaaca
6361 ttacatcatt aaccattaat tcaaatttca aaatttaaaa ttatgagtta gccactttgt
6421 attataatta aaccttagtt ttagaatata gggtatgaca tattgacttc atgggattac
6481 tccttaattc ttttggataa taattacatt ttagttgttg ttaactattg gaaagtgtct
6541 caaattgtat tttaagtcaa tttagaaagt tattgataat ttcctaatag aagatatttt
6601 tgaaagtggg tttcctatta ttgtaggaaa tattctattg tgagatcttt ttaggaaaat
6661 gtatctttga caattataca ctyagttttc tatatataaa cttcctttat aattaggaaa
6721 aaatatagta agagattttg accaaaatag taagtctctt tttgggcata aattggagct
6781 ttgggatttg agagctttaa gagttgtaac tcctttaaca atagtgaaag ttcttcttcg
6841 tatttgccta tgcatgtagg tttaaggctg aaccacgtaa atcattgtgt gttttgtttt
6901 cttttttctt attattattc tttgtcgtga tttgcacaac aaattggcat tagagctaag
6961 gttattagat ttggaatggt gataaagttt gaggttgaga agtttgttgg aaaaaacaat
7021 ttcagtttgt gtcgcgttaa gatgcgtgct ttattggttt aataggggtt gtacaaagca
7081 ctaaaatata gagaggctct accaacaacg atgtttgatg atgaacttat ggagaaagcg
7141 catagtgcta ttctattgtg cttgggtaat gaggtgcttc gtgaggttgt agaagaagat
7201 acaactacca agttatggtt gaagttagaa agtctgtata tgacgaagtc tcttacaaat
7261 ctcttaaatt taaagaattg gttgtatact ctccagatga aagaaggtac atccaccatt
7321 aaaaaccacc ttgatgagtt taataaaact ataatggatt tgagaaatat tgatgttaga
7381 attgatgatg aaaaccaaac cataattttg atgtgttccc tatcaaattc ttatgagcac
7441 ttcctaaata ctatggtata tggtagagat actatctata tagagaatgt tagagcagcc
7501 ttgaactcaa gggagttgaa aaataaagtg ttcaaaagta gagaagatga ctcaagtgaa
7561 ggtttggtgg ttaaagggag aacattaaag aaaaataatg atagaaaagg tcaatctaga
7621 tcaaagtcca agggaaacaa aaaatgtttc aagtgcaaca aagaagggca ctatgtgaaa
7681 aattgtccag attgtaaaga aaaagaaaag ggaaaaactt ttaattctag tgatgtagta
7741 gttgcagaag aaaatttaga tactacagat gttcttgcaa ttactattac aaactgaagt
7801 gatgagtgga ttcttgattc agggtgctcc tatcatatgt ctcccaatag gaattggttt
7861 agtacgtacc aactcataga tggtggaaag attctcatgg gaaacgatgt agcttgtaag
7921 gttattggga tagacataat tcaaattaag atgcagggtg ccattataag gacattaatt
7981 gatgtaaggc atgttccata attgaagaaa attttgattt ctttagggac acttgactcc
8041 aatggatgca catataaagc tggaggtgga gttttgagga tttcaaaggg tgctcttgtt
8101 attatgaaag acaaaaaaat taatggtcct taaacattgc aggatagcat agttacaagt
8161 gcaactacaa tttcaacctc acaatcaatt atagagacta ctagattatg acatatgtgg
8221 cttggtcata tgagtaagag aaggttgaca attctaagca aacgaggttt gtttgatgga
8281 caaaaagttg gagaactgat tatatccatt tggatctttg gagcccttct caagttgtat
8341 cacatggtgg tggaagatat atgttgacct ttattgagga ttactttaga aaggtctggg
8401 tatatatctt gaaacataag aatgatgtct ttgggaagtt caaggaatgg aaagtcatga
8461 tcaagaagca gayyggaaaa tagatcaagt gcttgagaat tgacaatggc atggaattct
8521 atgggaaara gtttaatgag ttttgcaaga atgaaggtat tgtgagacac cgcacagtta
8581 gacatactcc atagcaaaat ggtgttgcaa aacatatgaa tattagaact tttttagaga
8641 aagcatgatg catgctttcg aatgtagggt tgtcaaagga attttggtct aaagtggtaa
8701 atttagcttg ttatcttgtg aatagatctc ctcaattcct attaattgaa tgactcctta
8761 agaggtatgg tttggttttc cttctaatta tgttaagtta agaatttttg gttgtcctac
8821 ctatgctcat gtgaatgaag gtaagttgga accaagggta aagaagtgca tattcttagg
8881 atatgttgat ggagtgaaag agtataagct atggtgccta gattcaaaat tctccaaatt
8941 tcttattagt aggaatgtga cttttaatga gtttgcaatg ttgagtccta ggaaggagca
9001 acttcataca gaaaacaacc cctgtgtgag agaaaatatg gagtttgtga ctaaagcttc
9061 aaaaaccata gaaaaaattc aataaaacca aatgaagaaa aagtgcaact tcttgatgat
9121 aaagaaaatg caccacaata acaaaaatat tgtttgtcta gagatataat gagaagacag
9181 attaaaccac cacaaaggta tgcttatgca aatttggtta cttatgcaat tagtgtgcaa
9241 gaaagcattc aaagggatag acctcaaact tatcatgaag ccatcactat tagagaatct
9301 acatagtgaa ttgttgctat gaatgaggag attgaatctc ttcaaaagaa ccacacttgg
9361 maactagttg agaaacctaa aaatcaaaag aaatgaagga attccaagag tgaaggrtgc
9421 taggttcaaa gcattcttgg tggcaaaggg ccacacacaa aaagagggtg tggacttcaa
9481 tgaaatgttt tctctagttg tgaagcatag ctcaaccagg gtgttacttg ctatggttgc
9541 tttatttgat ttatagttag agaaacatga tgttaaggtt acttttctac atggtgagtt
9601 ggaagaataa atttatatgc atcaaccaga gggatttatt attttgggaa atgaagacca
9661 tgtttgttta ttgaagaaat ctctttatgt ttgaagcaat ctcctagggt gtgatataaa
9721 atgtttgata cttttatgat tggtaagggc taccatagga gtgagtatga taattgtgtt
9781 tatcaaaagg aattgtttgg tggttttttc atttatttat tattatatgt tgatgacatg
9841 ttaattgtct gcaataatat gtctaagatt aacaagttga aaactcaaat ttaaggagag
9901 tttgaaatga aagaccttgg agttgtaaat aaaatttcga gcatgaaaat tcatagagat
9961 cgaaaaatag ggaaattgta cttatagcaa aaaaagtaca ttgagaaagt gttagaacgc
10021 tttggaaggc aagrgtcaaa actagtgagt actccattag tagctcactt caaacttttt
10081 aatgctttat caccatagat tgaagaagtg aaagagtaca tttcacatgt tccttatgct
10141 agtgcagttg agagcattat gtatgtcatg gtttgaacta ggctagacat ttcacatgta
10201 gttagtgtgg tgagtagata tatggatcac cctggaaaga tccattggcg agcagtgaaa
10261 ttgatacttc gataattgag aggagcatca catgttggct tagtatatga aagaagtatt
10321 gacatctttg gggaaattgt tggttatgtt gattttgatt atgttggaga tttggacgga
10381 agaagatctt tatcaaagta tgcatttact ttatatggta gtgttattag ttggaaaaca
10441 acttagcaat ctacaattgc tttgttagcc actgaagtag aatacatgac aaccacaaaa
10501 gcagtgaaag aagttgtttg gctagcgatt taggcttgca acaggagtta attgttgtgt
10561 attgtgacag ccaaagtgcc atacatttga ctaaaaatca gatgttccat aagaggacca
10621 aacatattgt tgtcagaatg tattttatta gggacatgat tgcacaaagt gctattgtag
10681 tgaaaaaaat tcctatggtg gacaatcacg tagatatgat gactaagttc atttctacgg
10741 ttgagttaaa gyattgtttg gacttaattg gtgttagtag tatctgaaag cccttatggg
10801 gtgtargagc aaagtaactt gggagacttt tgagtttgtt tgaatcttga gaatttgaga
10861 caaggtagag attgttggaa agtgtctcaa attgtatttt gagtcaattt ggaaagttat
10921 tgatagtttc ctaataaaag atattcttga aagcgggttt cttattgttg taggaaatat
10981 cctattatga gatcttcttt ttaggaaaat gtatctttga caattataca cttagttttc
11041 tatatagaaa cttcttttct aattaggaaa acatatagga agagattttg atcaaaataa
11101 taagtctctt tttgggtata aattggggct ttgggatttg agaactttaa gagttgtaat
11161 ctcctttaac aatagtgaaa gttcttcttt tgttttc
//