LOCUS AM429026 5772 bp DNA linear PLN 05-FEB-2008
DEFINITION Vitis vinifera contig VV78X257743.3, whole genome shotgun sequence.
ACCESSION AM429026
VERSION AM429026.2
DBLINK BioProject:PRJEA18357
KEYWORDS .
SOURCE Vitis vinifera (wine grape)
ORGANISM Vitis vinifera
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis.
REFERENCE 1
AUTHORS Velasco R.
JOURNAL Submitted (19-DEC-2006) to the INSDC. Velasco R., Genetics and
Molecular Biology, istituto agrario "San Michele all'Adige", Via
Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A.,
Pruss D., Pindo M., FitzGerald L.M., Vezzulli S., Reid J.,
Malacarne G., Iliev D., Coppola G., Wardell B., Micheletti D.,
Macalma T., Facci M., Mitchell J.T., Perazzolli M., Eldredge G.,
Gatto P., Oyzerski R., Moretto M., Gutin N., Stefanini M., Chen Y.,
Segala C., Davenport C., Dematte L., Mraz A., Battilana J.,
Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., Lackey A.,
Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C.,
Lanchbury J., Bogden R., Skolnick M., Sgaramella V.,
Bhatnagar S.K., Fontana P., Gutin A., Van de Peer Y., Salamini F.,
Viola R.
TITLE The first genome sequence of an elite grapevine cultivar (Pinot
noir Vitis vinifera L.): coping with a highly heterozygous genome
JOURNAL PLoS One 2(12), e1326-e1326(2007).
REFERENCE 3 (bases 1 to 5772)
AUTHORS Velasco R.
JOURNAL Submitted (04-MAY-2007) to the INSDC. IASMA, Genetics and Molecular
Biology Department, Via Edmondo Mach, 1 38010 S. Michele all'Adige
(TN) - ITALY
COMMENT NOTE: This is a 'working draft' sequence. The true order of the
contigs
and the gap size among them are not known. The actual genome
coverage is
11X, 7X sequenced by Sanger method and 4X by pyrosequencing.
Sequencing
effort has been performed by IASMA, Myriad Genetics and 454 Life
Science.
The gene prediction has been performed by FGENESH program in
collaboration
with Softberry, while the identified genes has been annotated by
similarity search and their function has been described using Gene
Ontology terms (www.geneontology.org).
FEATURES Location/Qualifiers
source 1..5772
/organism="Vitis vinifera"
/chromosome="12"
/cultivar="Pinot Noir"
/mol_type="genomic DNA"
/clone="ENTAV 115"
/db_xref="taxon:29760"
CDS complement(join(334..713,1068..1584,2425..2526,2695..2747,
2825..2885,2970..3119,3442..3450))
/locus_tag="VITISV_021574"
/product="hypothetical protein"
/note="GO:0003746 GO:0005488 GO:0005853 GO:0006414
GO:0006412"
/note="highly similar to EMBL:AP008208"
/db_xref="GOA:A5AKT0"
/db_xref="InterPro:IPR001662"
/db_xref="InterPro:IPR004045"
/db_xref="InterPro:IPR004046"
/db_xref="InterPro:IPR010987"
/db_xref="InterPro:IPR036249"
/db_xref="InterPro:IPR036282"
/db_xref="InterPro:IPR036433"
/db_xref="InterPro:IPR040079"
/db_xref="UniProtKB/TrEMBL:A5AKT0"
/inference="similar to DNA sequence:EMBL:AP008208"
/experiment="confirmed by EST"
/protein_id="CAN75785.1"
/translation="MALVLHAGKTNKNAYKTLIAAEYSGIKVELXQNFEMGVSNKTPE
FLKMNPIGKVPVLETPDGPVFESNAIARYVTRLKADNPLYGSSPIEYGHIEQWIDFAS
LEIDANIGHWFRPRMGRAVYLPPFEEAAIAALKRALGALNTHLASNTFLVGHSVTLAD
IVMTCNLYMGFSKLMTKSFTSEFPHVERYFWTMVNQPNFSKILGEVKQTASVPPVSSA
KKPALPKEHVKPKHKDEPKKEVKKEPAKPKEAPVGEEEEAPKPKPKNPLDLLPPSKMI
LDEWKRLYSNTKTNFHEVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGF
LQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFIIDECYDMELYEWKKVDI
SDEAQKERVNQMIEDQEPFEGEALLDAKCFK"
BASE COUNT 2038 a 1052 c 936 g 1673 t
ORIGIN
1 ttttatatag aaatgtatga ttttttattt ctcatyaagt yaaaatgaat atgttgattt
61 ctatgtttgt ttgagagttt gatgtttgat tttttatttc tcatacacaa caaaagaaat
121 gagaaataaa awwtcaaacw tyaagcacac aaacaagcat agaaatcaaa atatcacttc
181 aataacattt tttttttttt ttgataggta acatatcact taaataacaa atataaacta
241 aggattcaat ctgtctagga aaggaagaga aaaccaagct ctaccaggaa aataaaaaac
301 aaaaacatat cctttcagct agggatggtt ttctcacttg aagcacttgg catccagaag
361 agcctctccc tcaaaaggct cctgatcttc tatcatctga ttcacacgct ccttttgggc
421 ctcatccgag atgtcaacct tcttccactc atagagttcc atgtcatagc actcatcaat
481 tataaattga ggtatctctt gcccgcggaa aagccacagc cccttcacct tgaatggggc
541 ctctgagccg attacaagca tcttcccaaa agcatacttg cgtgccagat ccatccgctg
601 aaggaatcca ccaaccttgt tcagagttac gaatgagacg gtattctcgt cattgtattt
661 gtaatcacag aaccaaagag agtatccctc gggatcgtac atgtcccaga atcctgcata
721 atcatgaaca tattcattgt gaacttcaaa gttttaaacc ttgaagaatg agaagtagaa
781 aacagagcaa ccatagcaac ttatcaacta ggcttgttgt cacagcttag ctgcccaggc
841 ccacaaaata agtataaata ataacaattg ctcagtcaga gttccaatta ttcctatgtg
901 ggaaggccta atatagtgga ctgactatgt caagtcaaat tcacctgtaa tgggcttgca
961 tcaataagga ttatcattta tagaagcatg agaaaagagg cttgcatcca taacagattt
1021 cttttgtcat tttttttata aaaaaaaaga aaaagaaaga gagatacctt taattgcaac
1081 ctcatggaaa ttggtcttgg tatttgagta gagtctcttc cattcatcca gaatcatctt
1141 acttgggggc agcagatcaa gaggattctt aggtttgggt tttggtgctt cttcctcttc
1201 cccaacagga gcctctttgg gctttgctgg ctccttcttg acttctttct ttggttcatc
1261 cttgtgcttt ggtttgacat gttcttttgg cagggcaggc ttctttgcag acgaaacagg
1321 tgggactgat gcagtttgct ttacctcacc caagatcttg ctgaaatttg gttgattaac
1381 catggtccag aagtatctct caacatgagg gaactccgag gtaaagctct tagtcatgag
1441 cttactgaat cccatataca aattgcatgt catgacaatg tcagccaggg tgacagaatg
1501 cccsaccagg aaagtgtttg aagcaagatg tgtgttcaaa gcacctaatg ctctcttcaa
1561 tgcagcaatt gcagcctcct caaactatac acagaaaact atgatcagga aggattaaac
1621 aatcaaggag ctaaactgga aagcaaaatg gtagaatgca ttcatgatgt aagaacatta
1681 aaatttttgt gaagaataat agattaaaga acmatattac aactacaaat gaaccctaaa
1741 aatgtcttta cttaggagta tagtttatcc ttatatcata gtaaatgaca catgaaaaat
1801 gaatcattcc attaatttgt gatcacatgg gaaggcacat gtccatcctc tcaagagaag
1861 tcactgtgcc atcaacagca ttgtgggaaa aaaaagaaga agaaatccat gtttggtttc
1921 tgcatataaa aaggaaatag acagggaaca caagaaacat tgaaataaat atctgtctcc
1981 tgagcaaaga gacattgaag gaaacaaaat tattggaaca gttgactgct ttcttacttg
2041 gccattctac ccctaatttt cataaatggg aaaactcgac aaatgtcaat gcyagaaaaa
2101 gtgcaagaaa tgcaattcca tgcaagcaga aaatttggac ttatagagcc tccatttttg
2161 ggcattatcc atttcttcat ttttcccaag aagcaaagaa agcttactgt gaaatgataa
2221 atgtcaaatt caatgccata cagacagaag tactcctttt caatgctatg acaaaattca
2281 taggaaatac tgatttccat tcaatgtcca aaggcaaaca agaatattga ttccacccaa
2341 ccccctttcc tttcttgcct ctaggcgtgg agtgaagcat agcagagaaa tgagaaaaat
2401 tattaaagat gataatggac caaccggtgg aaggtataca gcacgtccca tccttggtct
2461 aaaccaatgc ccaatattag catcaatctc caatgatgca aaatcaatcc actgctcaat
2521 gtggccctgg gaaaaacaag aggcagraga taataagcct aattgtccac aagaaagcaa
2581 caacacttgt ttttatacat ttatgggcag tgatgaacac accacagaaa caaataagag
2641 taaataaaca aaaattaaat aaggaaaaaa atcaaccgga acagaaaatc ttacatattc
2701 aattggagaa gagccataaa gggggttgtc agccttcaat cgagtgactg cagcaacaaa
2761 tataactgta agtttcactc tatgcaacaa aggaacaaaa ggaaaaccat gaatgttgtc
2821 ccaccgtaac gsgctatggc attgctctca aatacaggac catcaggtgt ttccaacacg
2881 ggaacctaca tcaacataac atccttttag aatattaaaa mcctaaacac aagtaccaca
2941 gatgatttcc tttgattraa aaactgtacc ttcccratag ggttcatctt aaggaactcg
3001 ggagtcttgt tggagacrcc catctcaaag ttctgarcca gttcaacttt gataccgctg
3061 tactccgcag caatgagtgt cttgtaagca tttttgttcg ttttccctgc atgcaagacc
3121 tgcaaagcaa atcaaacaaa tgtatttttt caagagataa tcagtatgct cagaatcaaa
3181 tcctttatca acagtttttc ttccccaaat ttcaaaaatt ccaaaattga aaacaaaaga
3241 aaatttggaa taaagggagt tgttatgcca ggtggacgct ccaactttcc accttaagtg
3301 attaggtaaa aagattaatc tccttgttcg attcatcatg agggcgtctc aggaatacat
3361 aaattaccaa acaaacatgt ttttcacact aagccaattg aaaaaaaaaa tcgtgaaaag
3421 aaaaatatgc tatcaactca ccagagccat ggcttatcgg aaaaacgtct cccttcgatt
3481 tagatctgaa cacataaaca aaacacaaac ccatcaaaaa ggaacaacca aaacctccgt
3541 ttgtttcact agaaaacatt ggaaaaagaa atagaaaacc caaactttac actcaattcg
3601 cttaattctc cggctaaata gtctctccat caagcccamt accaaaattc aaatccttct
3661 ccttagaaaa acttctcact taaatgaacc acaaacccga caaaaagaca caatcagaac
3721 tcccgtttgt ttcactagaa aacattcccc aagagaaaga cccaaacttt acgcctcgtt
3781 cgatctatat tctaacaaag ctaccaaaat tcacgtcctt atcaatggta aaatcttttc
3841 cccaaataac ataaaagaaa tcgaaacttt ttcaacttca agaaacaatt ttcaatgcaa
3901 gcgaaaggag caaactgaaa gcaaactgtg gaagaagaag aattaaagaa attgagatcc
3961 agtcattcgg atttggggtc ggagagagta cctttgacca ggagagttct tccgaasgca
4021 cacgagaagt gggagcggca gagtgataga taaaaagtga agagggatga gggatgcaac
4081 ctagggtttt tgtagagaag ggaaaggatc caaggstcag attaaaaggc ttcggtcttt
4141 ttatttattt atttatttat tttattattt ttgggtcggg ttaycaaccg ggttcgawta
4201 ttcggacrtt agtcttgttt gattccaacc cggttttccc atcttcctta ttaggccatg
4261 tttgsytgcc tcattcctat tcaactgatc cttatwtttk atgggcaccg gatgtgggtc
4321 tctctgtcgg tcaaggcatg agcaccgtcc ayatttgttg tgcaagtrrt aaatgatccg
4381 aaycgttaca tcaagagcaa ttatgagttt aaaygcttaa ctttaaacyt agaaaatatc
4441 gaaattyrgg tatgayaaaa attycttwaa aaarccstay cccatttctt tgaaagactg
4501 acataaactt cggagggaca tgytcaaaaa atyctttrgg acataycttg ttryagggat
4561 attaagtgtt ggtacrtgac caataattat tataaaatag wttttgaaaa tatttttyaa
4621 aaataaattg agaataatyt ccaagaacaa ttttataatg ttttttaaat aaaaaaaact
4681 atttggaaac ttatamtatt ttcaacttat tttatatatt tttaaaaaat aattttttat
4741 gtaatacttt attttcaatt atttttcatt attttttaaa ataactctaa aaatagaaaa
4801 taacatatta ttttatgtta ttaagaacaa aaacaattaa aaaawtttyk attgtcaaat
4861 atattttctc ttttttgaag gcaatcaaca aataaacttt tttttttatt tatagatgtt
4921 agcctagatg tgagattata atgtgtttca ttactmccac tcactccata tctctctccc
4981 tcttcctatg tgttaaaaaa attaaactrr tccaatataa ggtaatcayc ctagaggagg
5041 gtgaataggg tgatggttca tttttgcaaa tttaaattat atgaatgtaa gakacaatta
5101 tatgcaaata tataataaaa caatataaag acaattgcat rtaaagtaaa ataatatrga
5161 agagaaaatg caaatacaat atttttmtag tggtttggtg caacccgacc tacgttcact
5221 ctcctttrac ttcaatacta agcttgaggt tctactaatt caatgtttta aatacaagtc
5281 tttaagcaat acaattgaat tatgattcta atccactctc ttggattttt ggctccaaac
5341 accttttaca attcttaaga gatacctcat tcttgaacaa cccytcaagt gatctcttct
5401 caaatattta caaaagataa gaaataatct cacaaaatcr twgyacaaaa ttttagactt
5461 aaatgtacaa gaaaaactar gattaaatga tgcactaatg atatgcaagt tttaraataw
5521 tggtgcacta aaaaayactc tcctaaggct caaatatatt caagaaatat ttaagaaggt
5581 taagtacatg aaacaatgaa gattaaaagt ctttttatat aggaaaaatg ttaaattagc
5641 tattgagggt gagaaaataa atgctatact taattaagaa aacacccaaa rgaggggggg
5701 gggtgaattg gggttttwat taaaaaagtt actttttact aattacaacc taaaaccaaa
5761 aatttaccta aa
//