LOCUS AK170079 3930 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630015E21 product:hypothetical protein, full insert sequence. ACCESSION AK170079 VERSION AK170079.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3930) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Dr. John Todd (Dept. of Medical Genetics Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome Trust/MRC building Addenbrookes Hospital Cambridge) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F630015E21 FEATURES Location/Qualifiers source 1..3930 /cell_type="NOD-derived CD11c +ve dendritic cells" /clone="F630015E21" /db_xref="FANTOM_DB:F630015E21" /db_xref="MGI:3553075" /db_xref="taxon:10090" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="NOD" CDS 78..2549 /codon_start=1 /note="hypothetical protein (evidence: CDS)" /note="putative" /protein_id="BAE41550.1" /transl_table=1 /translation="MAEPSAPESKHKSSLNSSPWSGLMALGNSRHGHHGPGTQSASSA AAPKPGPPAGLSGGLSQPAGWQSLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPW FNYRSTHHLASHGFYEFLNWFDERAWYPLGRIVGGTVYPGLMITAGLIHWILNTLNIT VHIRDVCVFLAPTFSGLTSISTFLLTRELWNQGAGLLAACFIAIVPGYISRSVAGSFD NEGIAIFALQFTYYLWVKSVKIGSVFWTMCCCLSYFYMVSAWGGYVFIINLIPLHVFV LLLMQRYSKRVYIAYSTFYIVGLILSMQIPFVGFQPIRTSEHMAAAGVFALLQAYAFL QYLRDRLTKQEFQTLFFLGVSLAAGAVFLSVIYLTYTGYIAPWSGRFYSLWDTGYAKI HIPIIASVSEHQPTTWVSFFFDLHILVCTFPAGLWFCIKNINDERVFVALYAISAVYF AGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGDDMKRENPPVEDSSDEDDKRNPGNLY DKAGKVRKHVTEQEKPEEGLGPNIKSIVTMLMLMLLMMFAVHCTWVTSNAYSSPSVVL ASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWDYGYQIAGMANRTTLVDNNTWN NSHIALVGKAMSSNETAAYKIMRSLDVDYVLVIFGGVIGYSGDDINKFLWMVRIAEGE HPKDIREGDYFTQQGEFRVDKAGSPTLLNCLMYKMSYYRFGEMQLDFRTPPGFDRTRN AEIGNKDIKFKHLEEAFTSEHWLVRIYKVKAPDNRETLGHKPRVTNIVPKQKYLSKKT TKRKRGYVKNKLVFKKGKKTSKKTV" regulatory 3908..3913 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 3930 /note="putative" BASE COUNT 1004 a 912 c 944 g 1070 t ORIGIN 1 gctccgccca gcacccctcg ctccaggcgg cggcggtggc cgcggaggac gagcgagacc 61 cgccgccggg gcacaacatg gcggagccct cggccccgga gagcaagcac aagtcgtccc 121 tcaactcgtc cccgtggagc ggcctcatgg ctctggggaa cagccgccac gggcaccatg 181 ggcccggaac ccagagcgcg tccagtgcgg cggcgccgaa gccggggccc cccgcggggc 241 tgtccggggg cttgtcgcag ccggccgggt ggcagtcgtt gctctccttc accatcctct 301 tcctggcctg gctggccggc ttcagctcgc gcctcttcgc cgtcatccgc ttcgagagca 361 tcatccacga gttcgacccg tggtttaact atagatcaac acatcatctt gcatctcatg 421 gattctatga gtttctaaat tggtttgatg aaagagcatg gtacccactg ggaagaatag 481 tgggtggcac cgtttaccca gggttgatga taacagctgg ccttattcat tggattttaa 541 atacattgaa cataacagtt cacataagag atgtgtgtgt attccttgca ccaactttta 601 gcggccttac atccatatct acgttcctgc taactagaga actgtggaac caaggagcag 661 gacttctagc tgcttgcttc attgctatcg taccagggta catatctcgg tcagtggcgg 721 gatcctttga taatgaaggc attgccattt ttgcgcttca gttcacttac tacttatggg 781 taaagtctgt gaagatcggg tctgtgttct ggacaatgtg ctgctgcttg tcatatttct 841 acatggtctc tgcgtgggga ggttatgtgt tcatcatcaa cctcatccct ctccatgtgt 901 ttgtgttgct gctgatgcag aggtacagca agagagtcta catagcatat agcactttct 961 acattgtggg tttaatatta tccatgcaga taccttttgt gggatttcag ccaatcagaa 1021 caagcgagca catggcagct gcaggtgtct ttgcgctgct gcaagcttac gcttttttgc 1081 agtatctgag agaccggttg acaaaacagg agttccagac ccttttcttt ttgggtgtct 1141 cactagctgc aggcgctgtg ttccttagtg tcatctatct gacatacaca ggttatattg 1201 caccatggag tggcaggttt tattcactat gggatactgg gtatgcaaaa atacacattc 1261 caattattgc atcagtgtct gaacatcagc ctacgacatg ggtgtctttc ttctttgatc 1321 tacatattct tgtatgtacc ttcccagcag gcctatggtt ctgcatcaaa aatatcaacg 1381 atgaaagagt atttgtcgct ctgtatgcga tcagtgctgt ctactttgcc ggagtgatgg 1441 tgcggctgat gctgactctg accccggtcg tctgcatgct gtcggccatc gccttctcca 1501 atgtttttga gcactatttg ggggatgaca tgaaaaggga aaacccacct gtggaggaca 1561 gcagtgatga ggatgacaaa agaaacccag gaaacttgta tgacaaggca ggtaaagtga 1621 ggaagcatgt gacagagcaa gagaaacctg aagagggctt gggccccaac atcaaaagca 1681 ttgtgaccat gctgatgctc atgctcctga tgatgttcgc ggtccactgc acgtgggtca 1741 caagcaacgc ctactccagt ccaagtgtgg tccttgcctc ctacaatcat gatggtacca 1801 ggaatatatt agatgatttt agagaagcgt acttttggct gagacaaaac acggatgaac 1861 acgcccgggt catgtcgtgg tgggactacg gctatcagat tgctggcatg gccaacagga 1921 ccactctggt ggataacaac acctggaaca acagccacat cgcactggtc ggaaaagcta 1981 tgtcttccaa tgaaacggcc gcctataaaa tcatgaggtc ccttgatgtc gattatgtgt 2041 tggttatttt cggaggagtg attggctatt ccggggacga tatcaacaag ttcctctgga 2101 tggtcaggat agctgaaggg gagcatccca aagacatccg ggaaggtgac tatttcaccc 2161 agcagggaga gttccgagta gacaaagctg ggtctcctac tctgttaaac tgccttatgt 2221 ataaaatgtc atactacaga tttggagaaa tgcagctaga ttttcgcact cccccaggct 2281 ttgaccgaac acgtaatgct gagattggaa ataaagacat taaattcaag catttggagg 2341 aagcttttac atcagagcac tggcttgtca ggatatataa agtgaaagca cctgacaaca 2401 gggagacact aggtcacaaa cctcgagtca ccaacatcgt ccccaaacag aagtatttgt 2461 caaagaagac tactaaaagg aagcgtggct acgttaaaaa taagctagtg tttaagaaag 2521 gcaagaagac ctctaagaag actgtttaaa tgcgctgttc tggcctcact tgcagcagtc 2581 cttgagagaa ccggtctttg ccttctgctc atgtcctgtt tcacagcacc aagggtacag 2641 aacatcgctg ggccaagtca atgtacaaaa tgttctggca atgcctcatt taaaattaaa 2701 ttggtttatt gagaacagct gtttctgatg tgtaacgtga agcaagacag agccctgctg 2761 tgagcagctg gcagaagatt tttttttttt aattattggt acatattacc cttcaaatct 2821 gagaatttgg actaattgca ccaaagaacc ctctaatttg gtccctggca catgcgtacc 2881 tgtcaacttt ttttctttta caagacctgc attttatttg aactacccaa atagcaatat 2941 gtaagacaga aatgcagatg tgatgagagc ttcttgacca gtaaacaaac tagcccaggt 3001 ctgagagaga cgtgctaaag gagagtctac gtctgggaac tctatttatt ttcctgtttc 3061 tccggtgtga agaatgtttc atcaaatgtc cactttgtcg ctcactgccg ctgtaagcag 3121 ccgctgctga cggtgggcct ccctccgcgt agttagctga ctagatgttt gtgttcaggc 3181 atccggatgc actgcggtta gcgggcatcc tcaccaggta ctcacagagc agattccatg 3241 cattcttcat tcaagggcta aatttctctc ctttgggaat catggcaagc gcacacagaa 3301 cgttgctggc caggatggct gttacctcag tactgaggtc ggctccatgt tcccacgcag 3361 aagattaagg gaaagccctt acggtggaca ggcatgcaga gttcatttct gtgactctac 3421 acagtgacaa aggatttgta aactttgcct ggattttcct cattttatac cagttttgtt 3481 catcacgatg gtttctgttg accgcttcat gtttttatac cttaagcatt tgatgaaaca 3541 ctctctagtg ctctctaggc gtttcttact tttattacaa atgtgacaat tgtcaaaaga 3601 tgcactaaaa tataaatgga gattgagcct gttcattttc cagcttatag gcaactttat 3661 acagacttga aatctttatc cagttgttta gtaaagtgag agagaggttt cctgccacag 3721 gagaactttt acacaacacc ccactgcttt agtgggacag ttgagagcag tgtgtccctt 3781 ttatgaagaa cccgtcattt acagcgctcc gggagagaga atgttactgc agatcccttt 3841 tccacggtgt agatactctg atttatagaa ttcattcttg atccagatga tggttctttc 3901 acagaccaat aaaaaaaaaa aagtataacc //