LOCUS AK169370 2078 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:I920193A14 product:phosphoserine aminotransferase 1, full insert sequence. ACCESSION AK169370 VERSION AK169370.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2078) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I920193A14 FEATURES Location/Qualifiers source 1..2078 /clone="I920193A14" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I920193A14" /db_xref="MGI:3572446" /db_xref="taxon:10090" /dev_stage="13 days embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="liver" CDS 52..1164 /codon_start=1 /note="phosphoserine aminotransferase 1 (MGD|MGI:2183441 GB|AK049855, evidence: BLASTN, 100%, match=2077)" /note="putative" /protein_id="BAE41118.1" /transl_table=1 /translation="MEATKQVVNFGPGPAKLPHSVLLEIQKQLLDYRGLGISVLEMSH RSSDFAKIIGNTENLVRELLAVPNNYKVIFVQGGGSGQFSAVPLNLIGLKAGRSADYV VTGAWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLNPDASYVYFCANETVHGV EFDFVPDVKGAVLVCDMSSNFLSRPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLG FSLRECPSVLDYKVQAGNNSLYNTPPCFSIYVMGMVLEWIKNNGGAAAMEKLSSIKSQ MIYEIIDNSQGFYVCPVERQNRSRMNIPFRIGNAKGDEALEKRFLDKAVELNMISLKG HRSVGGIRASLYNAVTTEDVEKLAAFMKNFLEMHQL" regulatory 2059..2064 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 2078 /note="putative" BASE COUNT 500 a 488 c 515 g 575 t ORIGIN 1 ggttcgcgtg gtctctgctc ctgccacttc ccctgctgtc gccttagcac catggaagcc 61 accaagcaag tggttaactt tgggcccggg cctgccaagc tgccacactc ggtattgttg 121 gagatccaga agcagctact agactacaga ggactcggca tcagtgtgct cgaaatgagt 181 cacaggtcat cagattttgc caagattatt ggcaatacag agaatcttgt gagggaattg 241 ctagctgttc ccaacaacta caaggtgatc tttgtacaag gaggtgggtc tggccagttc 301 agtgctgtcc ccttaaatct gattggcctg aaagctggaa ggagtgctga ctacgtggtg 361 accggagctt ggtcagctaa ggctgcggaa gaagccaaga agtttggaac ggtgaacatt 421 gtccacccta aacttggaag ttacacaaaa attccagacc caagcacctg gaacctcaac 481 ccggacgcct cctatgtata cttctgtgca aacgagactg tgcacggggt ggagtttgac 541 ttcgtacctg acgtcaaggg agcggtgctg gtctgtgaca tgtcctcaaa cttcttatcc 601 aggccggtgg atgtttccaa gtttggtgtg attttcgctg gtgctcagaa gaatgttggc 661 tctgccgggg tgacggtggt gattgtccgg gatgacctgc tggggttctc gctcagagag 721 tgcccatcag tccttgacta caaagtgcag gctgggaaca actctttgta taacacacct 781 ccgtgcttca gcatctacgt catgggcatg gtcctggaat ggatcaagaa caacggcggg 841 gccgcagcca tggagaagct cagctccatc aaatcccaaa tgatttatga gatcattgat 901 aattctcaag gattttatgt atgcccagtg gagcgccaga atagaagcag gatgaacatc 961 ccatttcgca ttggcaacgc caaaggagac gaagctttgg aaaagcggtt tcttgacaag 1021 gcggtagaac tcaacatgat ctccttgaag gggcacaggt cagtgggagg cattcgtgcc 1081 tctctgtata acgctgtcac aaccgaagac gttgagaagc tggcggcctt catgaagaat 1141 ttcttggaga tgcatcagct gtgaacatga ccagccacgc tctgcctgtg agcagcacgc 1201 agcgtcgttt agagtaactt gggattgact acagaaactt aacagacatg gatttttttt 1261 tcccaaatac atgcttatta cagattcctt tctcaaagaa taacgactaa acatcagggc 1321 actgcagagc tgaggaaact cccagctaac agccaccttc attctcatgt gacctggaag 1381 cattttgaaa gctttctttc ctgttgctct tctaaatgaa ttcagcctgt cagccatctt 1441 tgctgccccc ttctctaggt ggactgcctt gggctttgcc ctgctggttc caactggtta 1501 ttattaggag gttggaggcc ctgtgggctg gattgacagc agtgagtttg ctgggttctg 1561 cagcagttgg ttcaagtcaa cagcgactca cgagcgtttt ggatctgtgt actgcaattc 1621 ccataaagag ataggtgtgt tatgctgtgt ttatgtagtg ggtattgttt taaacaccgt 1681 acggtttatg cctatgcctt tatatttcta atgaaacagt tttgttcagc ccatgacttt 1741 gtgcatgact gtcgtccgtt ctagtcacct gtgctctcca tctactgcct tttaaagctg 1801 cgtcatgaga aggatctaca cgttccacca tgactctcgt ttcttgccac aagtagaaga 1861 aatggttgat tctttgcttt tcggttaggc cgttaaacaa aactcagtca cacccctgcc 1921 ttccaccctc aaactgtgat cacgtggctg ttcttgtagt ttaaccaggg caacactata 1981 tattccaggt ctatacattg ctgaggtctt tttctggttg ttcatgtatc agtgttttca 2041 atcgactgca tggaaaacat taaagtccta agtcatct //