LOCUS AK168087 1871 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730057A04 product:chaperonin subunit 7 (eta), full insert sequence. ACCESSION AK168087 VERSION AK168087.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1871) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I730057A04 FEATURES Location/Qualifiers source 1..1871 /cell_line="CRL-1722 L5178Y-R" /clone="I730057A04" /db_xref="FANTOM_DB:I730057A04" /db_xref="MGI:3567027" /db_xref="taxon:10090" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="DBA/2" CDS 133..1767 /codon_start=1 /note="chaperonin subunit 7 (eta) (MGD|MGI:107184 GB|BC008255, evidence: BLASTN, 100%, match=1785)" /note="putative" /protein_id="BAE40060.1" /transl_table=1 /translation="MMPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRG MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAA EFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAM TALSSKLISQQKVFFAKMVVDAVMMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKK TFSYAGFEMQPKKYKNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYD KLEKIHQSGAKVILSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSV NALVPDVLGHCQVFEETQIGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDA IMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLC DNAGFDATNILNKLRARHAQGGMWYGVDINNENIADNFQAFVWEPAMVRINALTAASE AACLIVSVDETIKNPRSTVDPPAPSAGRGRGQARFH" regulatory 1857..1862 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1871 /note="putative" BASE COUNT 461 a 437 c 545 g 428 t ORIGIN 1 gccttcctct cccgggctaa cgtctcgcca gaagcttctg ggcatttctc cggcgcggag 61 cattgtgggc ttgggtgggc ggccgcgagg cggacaactg acgagttgcg ggtacctgaa 121 gccgcttcca agatgatgcc cacaccagtt atcctgttga aagagggtac tgatagctcc 181 cagggcatcc ctcagctcgt gagtaacatc agtgcctgcc aagtgattgc tgaggctgta 241 agaaccaccc tgggtccccg tggcatggac aaacttattg tggatggccg aggcaaagca 301 acaatatcta atgatggggc cacaattctg aaactcctcg atgttgtcca tcctgcagca 361 aagactttag tggacatagc caagtcccag gatgctgagg ttggtgatgg caccacctca 421 gtgaccctgc tggctgcgga gtttctgaag caggtgaagc cctacgtgga agaaggttta 481 caccctcaga tcatcatccg agctttccgc acagccaccc aattggctgt taacaaaatc 541 aaagagatag ctgtgactgt gaagaagcaa gataaagtag agcagaggaa gatgctggag 601 aagtgtgcga tgacagccct gagctccaag ctgatctccc agcagaaggt cttcttcgcc 661 aagatggtgg ttgatgccgt gatgatgctt gacgagctgc tgcagcttaa aatgattggc 721 atcaagaagg tgcagggggg agccctggag gagtctcagc tagttgctgg tgttgcgttc 781 aagaagactt tctcttatgc tgggtttgaa atgcagccca agaagtataa gaaccccaag 841 attgccctct taaatgttga gcttgagctg aaagcagaga aagataatgc tgaaatcaga 901 gtccacacag tggaggatta ccaggcaatt gttgatgccg agtggaatat tctctatgac 961 aagttagaga agatccatca gtctggagcc aaagtcatct tgtctaaact ccctattggg 1021 gatgtggcca cccagtactt tgctgatagg gacatgttct gtgctggccg agtgcctgag 1081 gaggatctga agaggacgat gatggcttgt ggaggctcaa tccagaccag tgtgaatgct 1141 ctggttccag atgtgctggg ccactgccaa gtgtttgaag agacccaaat tggaggagag 1201 aggtacaatt tcttcactgg ctgccctaag gccaagacat gtaccatcat cctccgtggt 1261 ggcgctgagc agtttatgga agagacagag aggtccctac atgatgccat catgattgtg 1321 aggagggcca tcaagaatga ctctgtggtg gctggtggtg gagccatcga gatggaactt 1381 tccaaatacc tgcgggatta ctcgaggacc attcctggga agcagcagct gttgattggg 1441 gcatatgcca aggccctgga gattattcca cgacagctat gtgacaacgc tggctttgat 1501 gccacaaaca tcctcaacaa gctgcgggct cgacacgcac agggaggtat gtggtatggg 1561 gtggacatca acaatgagaa catcgccgac aacttccagg catttgtgtg ggagccagcc 1621 atggtgcgca tcaacgctct gacagcagct tctgaggctg catgccttat tgtgtccgtg 1681 gatgagacta tcaagaaccc ccgctccact gtggatcctc cagctccatc agctggccgt 1741 ggcagaggcc aagcccgctt ccactgagag gcgaggcggt ctgcacctcc ttgtgaggtg 1801 agggggtgga tgagaagatg gttgctggtc tgctgggttc tcactgaggt tatttaaata 1861 aagcttaagg t //