LOCUS AK167396 1390 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 15 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530012A17 product:Hypothetical RING finger containing protein homolog [Mus musculus], full insert sequence. ACCESSION AK167396 VERSION AK167396.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1390) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I530012A17 FEATURES Location/Qualifiers source 1..1390 /clone="I530012A17" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I530012A17" /db_xref="MGI:3565888" /db_xref="taxon:10090" /dev_stage="15 days pregnant adult" /mol_type="mRNA" /organism="Mus musculus" /sex="female" /strain="C57BL/6J" /tissue_type="placenta" CDS 30..527 /codon_start=1 /note="Hypothetical RING finger containing protein homolog [Mus musculus] (UniProt|Q8CEU6, evidence: FASTY, 100%ID, 82.4%length, match=240)" /note="putative" /protein_id="BAE39485.1" /transl_table=1 /translation="MASYFDEHDCEPLNPEREARNNMLLELARRVRGAWSWAPGGRSL FNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVI EMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQQQQHRLENLH GAMYT" BASE COUNT 329 a 372 c 346 g 343 t ORIGIN 1 ggtcagacaa gcccggcagc ccaggagcca tggcgtctta ttttgatgag cacgactgcg 61 agccgttgaa ccctgagcgt gaggcccgca acaatatgtt gctggaactc gcgagaagag 121 tgcgcggggc ttggagctgg gccccgggcg gcagatcact ctttaatagg atggactttg 181 aggacctggg attggtagat tgggaacacc accttccccc accagctgcc aaggctgtgg 241 tggagagcct ccctagaaca gtcatcagta gcgccaaggc tgatctcaag tgccccgtgt 301 gccttttgga atttgaggcg gaggagactg tgattgagat gccctgccat catctcttcc 361 attccaactg cattctgccc tggctaagta agacaaattc ctgccctctg tgccgccatg 421 agctgcccac tgatgatgac agctatgaag agcacaagaa agacaaggct cgcaggcagc 481 agcagcagca ccgcctggag aacctccacg gagccatgta cacgtgaggc agctgccagg 541 gctgagcgct cagcctctct gataccttcc ctctgcactc tgaatcatta aaggtttctt 601 tacccaccct gcagctgcac ggctcaccag ccgaagcagg ggctccttcc gaatcctcca 661 ccctgctgct agccagaaag atgtcaaagg tgtcaaatgt ccgaaggtgc caggctgcaa 721 ttccctctgc cagcctctag actctgggtg gtggggccct agaacaacca gggcttgggt 781 ctgagtgttc ttttagaagt caaactgtgt cagagcctgg cgctttgtag ctgtttaaaa 841 ctgataaatt aacttgcacc accccactcc ggaaatctct agttaacctt ggaaccttta 901 gttaaccgtg gaatcctggg ggtgttcttt atttccacat agaaaacttt taacattgta 961 aaagttgctc tctgtatccc actcctgtag gcgccattat caaggaatca aaggtcaagc 1021 cagcccaagt agggcaaggc tgtttagaga ctcttcaaag ggggacagtc cttgtggaag 1081 ttttgaaagt gggtttcatt cactatgtga ccttggctgt cttggaaccc actatataga 1141 ccaggctcgc cttgtactta ggacatcctt ctgctctgtc ttcccagtgt tgggattact 1201 ggtatgtaca cacccttacg atgtatctga atggcatctg tcactcttag tttctggcaa 1261 cctcaagaat ctttcctggg ggaaaggact tctgtccatc cctgcccact ggatcggacc 1321 ctccgtgatt ctccagaaca cactgcagac gtgcaaatta gaattctttt aatagatata 1381 aaaaagtact //