LOCUS AK165593 736 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN full-length enriched library, clone:G430033H23 product:hypothetical protein, full insert sequence. ACCESSION AK165593 VERSION AK165593.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 736) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=G430033H23 FEATURES Location/Qualifiers source 1..736 /cell_line="CRL-1443 BC3H1" /clone="G430033H23" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:G430033H23" /db_xref="MGI:3560632" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C3H" /tissue_type="brain" CDS 153..542 /codon_start=1 /note="hypothetical protein (evidence: CDS)" /note="putative" /protein_id="BAE38281.1" /transl_table=1 /translation="MASKIPFATDLTDYEKMPVSPFGKVKPSGEGTAQRPIEISASPL AELEDKIKRHTQQIRTRSFLGTNPMQDIKTANQDLETTKKLQEELRKLKVEMTLNKDH PFPSFTGNLSLHPPASQPQNIFFNTKS" regulatory 713..718 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 736 /note="putative" BASE COUNT 210 a 182 c 183 g 161 t ORIGIN 1 cggacttacc atgtgtgagg aaatgccttt ctttgcagct tggctccagg ctgagcccac 61 ttgcctttct catgcttctt gtgacccgtg agtgtgtagg tcgtagcctg tgcaggcaca 121 gcctggtaaa agacttctga ggctggacac tgatggcatc gaagattccc tttgccacag 181 atctgacaga ctatgagaaa atgccagtga gtccatttgg gaaagtgaag cccagcggag 241 aggggacagc acaaaggcct atagaaataa gtgcctcacc attagcagag ctggaggaca 301 agataaagcg gcacacacag cagatccgca ctcgaagttt cctgggtaca aacccaatgc 361 aagacattaa gacagccaac caggacctgg aaaccactaa gaaacttcag gaggagttaa 421 ggaaactgaa agtggagatg accttgaaca aagaccatcc atttccatct ttcactggaa 481 acctttcact tcacccacca gcatcacagc ctcaaaatat attttttaac acgaaatcct 541 aggaaggcag cgctgtcagc aggagtgaca agtaccttcc acacgaggag ctgctgtccc 601 ccatgtgtgt gggggctggc ctggatgaca actcgcgggt cttcagctgc cacacaggct 661 atggctttta atagacctga ttccttcctg aggctataga aggcttagct gcattaaaag 721 gaagaatgct gtaagc //