LOCUS AK162538 3548 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male urinary bladder cDNA, RIKEN full-length
enriched library, clone:9530092J24 product:unclassifiable, full
insert sequence.
ACCESSION AK162538
VERSION AK162538.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3548)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (14-APR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9530092J24
FEATURES Location/Qualifiers
source 1..3548
/clone="9530092J24"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9530092J24"
/db_xref="MGI:3540543"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="urinary bladder"
misc_feature 1..3548
/note="putative"
/note="unclassifiable"
BASE COUNT 851 a 788 c 815 g 1094 t
ORIGIN
1 tttttgtgta aaagtgtcat tttgttgtat tttgttcttc tgagacaggg cggcattgta
61 taagccaggc tgatcttgaa ccactcttgc ctcagccttg aaagctcctg aatacagatg
121 tgggtcacca tgcctggctg gcatgctcgt ttgtaaattg ggctgtcttt ttattactaa
181 gttgtatgag gttttatgca aatagccact tacccggtgt atgacataca tgcaagtccc
241 ttctggtttg ccccatctct tttcccctag agtgtgacta cccacataca catgcagcta
301 atggatttct ttgaaagaga catttattat taaggggacg gctcatggga attagttctg
361 tccttccacc atgcgggttc ccagggacca tcaggctgat gctgagtgct gagctgtctc
421 tatcacccgc agaagcattt gaattggtga agtctggttt ctttgttctt cattactcat
481 tgtttgagtg ttgtagctta gaatccattg tctcatctgg ggaaatggtg catgcctgcc
541 ttctgagagt tgtatagttt tagttcttat acttacatgt ttggttggtt catcttaagt
601 ggatctttga acctggtttg agactcatgc tcaagtcctg tgtcctgtgg catctggtgg
661 ttctgctcca catcttgaaa aggagacttt ccctattgaa ttgtcttggt gtactttgca
721 gttttttttt aatatatctt tttaaacatt ttgtgtattg gtttgtgagt gtgtgggtgc
781 tagagacaca cttgctagag tctgttttct ctttccaccc tgtgggtccc aatgattgag
841 ctcagattgt caggcttggt ggcaagcact gttacctgtc tagctatccc tctggccccc
901 tgcagtcatg tgacatgctt ataccaagtg agatggctag attggtcact gtagttcttt
961 atgaaaactt taggaggtta gcttttacat gatataaatc tgtcattaaa aattaattac
1021 atgtataaga tacaatatat aacatttcag tacatgtgtg atgtttcatg atcagctcct
1081 ggtagcatat ctatatcaaa catcatttct ttgtgttgga aacattcagc attctagctt
1141 tttaaatctt ttgagtgttt tgcctgagtg catgtctgtg catgcgatgc ccacagagtc
1201 agaagagggt gttagatccc atgtactgga gttacagatg gttgtgtgcc accgtgtagg
1261 tgttggcaac tgagtctttt cctctgggaa ggcagccagt gctcttacct gctgagcctt
1321 ctctccagcc actctactac ctgttttgaa gtgcacagtt aactgttaac tatagttacc
1381 ttacagtact ataaaatgtt agaagttgtt tttcttctcc acttgcattc ccgaacctat
1441 tagccattct ttccagttgt cttgagtttt ttcctaattc atcacaggtc attttgtaaa
1501 ataaaagcaa attattagag aaacaagtgc gtgctcatac atgacagtgt caaattttaa
1561 tgcaagttct aaagtggctt gtacgctcat ctccatggat agatggagat tcagagcaat
1621 gctggtccag agatgctcag aggacttggc catgtgttgg ccatgctcag tccgcttacc
1681 ctttgctggg cattgtcatt ccctccagtc ttgggaggac agccttctcc aaggcttgct
1741 aatggttcaa cttctaaact gccatctaaa tgaggcgggc catgtgctga gagcactcca
1801 cctgtaatca aggatgcttc ttacagtgtc tgtggccagt ggtggaatta taaggcaaaa
1861 cagatatagg aaggggtctc aacagaaagc ccacagccca cctggacagt cagtgtgtgc
1921 atgggaagtg tggcaaacca ttatgcaaag gtttatgagc tgctaagggg aaatttagtg
1981 taaaaacccc aactgagtat actcggtggc tccagttttt agaattgtgt gctgcattag
2041 actagtaaac tctaaactaa aattaaaaag gcactaaaca caagcaaggc cttcttggcc
2101 tcgcatgcac atcctcattg catctgacag tgaagaaagc cttccacctc acaactctcc
2161 aacaacttta ccatgcttgt tcctctcttc cttatcgttc ccttatgacc tcactttatt
2221 ccctggagct gtgcacccgg gtttcccagg ctctgtaatg agtttagcct ctgcctttga
2281 tattctacca gtcggcacac aaaaggcagc ttcaaagaca agtccacagt ccgcggctct
2341 ttcttatata ttcagaatat gcggacggag gcctgtgcgc tcccgcccgc gttagtgaca
2401 gtgatacagt gtgaatgtaa gacaagtcaa acatctaaca actgaggctg agacaaggac
2461 cctgctctat tgccacagaa tccagggcct aacggtgctg ctgactgtgt atttggagag
2521 atggtttgtg gtttttgtat agctagatga aaggtggggt gtttaatagg ctgattgcac
2581 ttacagttgg agtctcattt cgtggggctg ctgcagctgc cttttacatc ttagagaatc
2641 ttacagttca catggtttga tgctgtcata agtcttagtc ttatgaggtc gggtgctcca
2701 ctagtctgac ttccctgttc catccatctt tccctttttt tttttttttt ttgtggtggc
2761 tggccagccg tgtgctcaga ctgcattcgc acagacacat ggcagctcac attggtcaca
2821 tagagacaca tggcagctta cattggcttt aaatatggaa aagccagggc cttatggtcc
2881 catgctgtcc taactagcat caggacagcc atcacagtct gcttttccct tggtttttta
2941 agggtttccg tgaatatcta atatcccgtt gtgttgtccc ataatttacc ccaatgtcct
3001 gtttataatg aatcactttt cactaggcca tagaaaagac tttaaaaatg cagatctccc
3061 cctcacacac ataaatgttg cagatgtgca gcttggtctt catgagggcc ccaaacaact
3121 ggatcagggg ccatcccaaa ggctgttcct gtacataggc tatgttcttc tagctggcct
3181 gccttgtctg gcctcagtgg gaggggatgc ccctagcccc aaggagactt ggtgtgccag
3241 ggtgggagga tacgggaggc tccaccctct gaggtcaagg ggagggggag ggatgactga
3301 gaggaagtgc ataagtggga tgtaaagtga ataagtaaaa ataaaaggaa aaagaaaaga
3361 atgcagatct tgcatactgt ggtggcgcat gcctttatcc cagcactcgg gaggcagagg
3421 caggcagatc tgagtgtgag gccagcctgg tctacagagt gagttccagg atggtcaggg
3481 ctacacagag aaaccctgtc ttggaactac cacctcaccc ttcaccctcc acccccacct
3541 ctaccccc
//