LOCUS AK161688 968 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730551F09 product:GrpE-like 1, mitochondrial, full insert sequence. ACCESSION AK161688 VERSION AK161688.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 968) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=5730551F09 FEATURES Location/Qualifiers source 1..968 /clone="5730551F09" /db_xref="FANTOM_DB:5730551F09" /db_xref="MGI:3535488" /db_xref="taxon:10090" /dev_stage="8 days embryo" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="whole body" CDS 23..676 /codon_start=1 /note="GrpE-like 1, mitochondrial (MGD|MGI:1334417 GB|NM_024478, evidence: BLASTN, 100%, match=955)" /note="putative" /protein_id="BAE36532.1" /transl_table=1 /translation="MAARCVRLARRSLPALALSFRPSPRLLCTATKQKNNGQNLDEDL GHCEPKTDPPSADKTLLEEKAKLEEQLRETMEKYKRALADTENLRQRSQKLVEEAKLY GIQGFCKDLLEVADILEKATQSVPKEEISNNNPHLKSLYEGLVMTEVQIQKVFTKHGL LRLDPIGAKFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPALVGVVKDA" regulatory 951..956 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 968 /note="putative" BASE COUNT 249 a 232 c 276 g 211 t ORIGIN 1 ggacgcgacc tcgggggcag tcatggcggc tcggtgtgtg aggctggcgc gccgcagcct 61 cccggctttg gcactgtcgt tcaggccttc tcctcgcttg ttgtgcacag ctacgaaaca 121 gaagaacaat ggccagaacc tggacgagga cttgggtcat tgtgagccaa agacagatcc 181 accctctgca gacaagaccc tcctggaaga gaaggcaaag ctggaagagc agctgagaga 241 gaccatggaa aaatacaaac gtgctttggc agatactgag aatctacggc agagaagcca 301 gaagctggta gaggaggcca agttatatgg catccagggt ttctgcaagg acttgctgga 361 ggttgcagac atcctggaga aggcaaccca gagtgttcca aaggaggaga tcagcaacaa 421 caaccctcac ctgaagagtc tttatgaagg gctcgtgatg actgaagtcc agattcagaa 481 ggtgttcaca aaacacggct tgctcaggct tgacccaatt ggggccaagt tcgaccctta 541 cgaacatgag gccttgttcc acacccctgt ggaggggaaa gaaccaggca ctgtggcact 601 agttagtaag gtgggctaca agctgcacgg acgcaccctg aggccagctt tggtgggggt 661 ggtgaaggac gcttagctcc ctccctcagg ctctggactt tgtaggtcac ttgctagaac 721 tcgaagggcg ggcttgtaat ttctcatctg tgaattcatc tgacccttgc ccagccttgt 781 tggaaatctt aagtaagcta agcagaacat gaagctgctt gcacagtcag ggactctggg 841 agtctggtca ctgaatttag cattacctac ttcagaagag ggccatcagg acctcgggag 901 tagtatgcta acattgtatc tgttccacct ggtgattagt actttacaca aataaaaggt 961 ctttggct //