LOCUS AK160994 2540 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4022433J04 product:decay accelerating factor 1, full insert sequence. ACCESSION AK160994 VERSION AK160994.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2540) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (14-APR-2004) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=4022433J04 FEATURES Location/Qualifiers source 1..2540 /clone="4022433J04" /db_xref="FANTOM_DB:4022433J04" /db_xref="MGI:3533131" /db_xref="taxon:10090" /dev_stage="15 days embryo" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="head" CDS 50..1222 /codon_start=1 /note="decay accelerating factor 1 (MGD|MGI:104850 GB|D63679, evidence: BLASTN, 99%, match=1420)" /note="putative" /protein_id="BAE36139.1" /transl_table=1 /translation="MIRGRAPRTRPSPPPPLLPLLSLSLLLLSPTVRGDCGPPPDIPN ARPILGRHSKFAEQSKVAYSCNNGFKQVPDKSNIVVCLENGQWSSHETFCEKSCVAPE RLSFASLKKEYLNMNFFPVGTIVEYECRPGFRKQPPLPGKATCLEDLVWSPVAQFCKK KSCPNPKDLDNGHINIPTGILFGSEINFSCNPGYRLVGVSSTFCSVTGNTVDWDDEFP VCTEIHCPEPPKINNGIMRGESDSYTYSQVVTYSCDKGFILVGNASIYCTVSKSDVGQ WSSPPPRCIEKSKVPTKKPTINVPSTGTPSTPQKPTTESVPNPGDQPTPQKPSTVKVS ATQHVPVTKTTVRHPIRTSTDKGEPNTGGDRYIYGHTCLITLTVLHVMLSLIGYLT" regulatory 2526..2531 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 2540 /note="putative" BASE COUNT 827 a 515 c 509 g 689 t ORIGIN 1 taaaaacagc tccagccgca gccgggcaag gtctcttcta cctggggcta tgatccgtgg 61 gcgggcgcct aggactcggc catcaccgcc gcctccgctg ctgccgttgc tgtcgctgtc 121 tctgttgctg ctgtccccaa ctgtacgcgg agactgcggc ccacctccag acattcctaa 181 tgccaggcca atcttgggca gacactccaa gtttgctgag caaagcaaag tggcatactc 241 gtgtaataac ggctttaaac aagttccaga caagtcaaac atagttgtct gtcttgaaaa 301 tggccaatgg tcgagccacg aaacattctg tgagaaatca tgtgttgctc cagaaagact 361 gagttttgca tccctcaaaa aagagtacct caacatgaat tttttcccag ttggtactat 421 tgtggaatat gagtgtcggc caggatttcg aaaacaacct ccactcccag gaaaagcaac 481 ttgccttgag gatttagtat ggtctccagt tgctcagttt tgtaaaaaaa aatcatgccc 541 taatcctaaa gatctggata atggtcacat caacatacca accggcatat tattcggttc 601 agaaataaac ttctcatgca acccagggta caggctagtc ggtgtctcct ctactttctg 661 ttctgtcaca ggaaatactg ttgattggga cgatgagttt ccagtgtgca cagaaataca 721 ttgtccagag ccaccaaaaa tcaacaatgg aataatgcga ggggaaagtg actcttatac 781 gtatagccag gtggtcacct attcatgtga caaaggcttc atcctggttg gaaatgctag 841 catttattgt actgtgagca agtctgatgt aggacaatgg agcagtccac caccccggtg 901 catagagaaa tccaaggtcc caacgaagaa accaacaatt aatgttccaa gtacaggaac 961 cccctcaacg cctcagaaac ccacaacaga aagtgttcca aatccaggag accaaccaac 1021 tcctcagaaa ccttccacag ttaaagtttc agcaacccag catgtacctg ttaccaagac 1081 aacagtacgt catccaataa gaacatctac agacaaagga gagcctaaca caggtggtga 1141 ccgttatata tatggacata catgtttaat aaccttgaca gttttgcatg tgatgctatc 1201 actcattggc tacttgacat agccaacgaa gagttacgaa gaaagtatat aaaactactg 1261 ataatacttc tagtttgtta gactgtccaa gaagaatgga tacaataaat ttaatagtgt 1321 tgtttgttct gcatgctgtc attgtcttca agatgtgtta gaaatgttaa gaaagcatga 1381 agaaagtttg tttggtatgg catttgtgat gcatataagt ctcttggaaa tatttcaaaa 1441 ctagacaaat tcacaacatt gcatgtctct tttctaaaaa gtgtgggaaa gtgtttagaa 1501 aaatttccca gacttagtat tgggtaaatg tgggggaaga ggggaaaatc catgaatttt 1561 ctttagggct agaaatctaa tcccctgttt agttctagcc tttattaatt taaaatagga 1621 aggcttaaaa ccatactgaa tttagattgc caaaaagtaa acccaaagtc cccccaaaca 1681 aaacctttct gttcttgtta agcagaatcg cccacagagg tggcacattc taatgtaacc 1741 ccttgacctg aagatgtttt cacttttact ttctatgaag atgagttggc taaatgttat 1801 aaaggaagac tatactaaca aacctgcagt ggaagctcac ttgatacagt gcttgtacca 1861 caagcctaaa tctctgagct ccttcctcag cacacagtta taataatccc agtatttggg 1921 agatgaaggg aagaagatca gaagttcaag gtcattctgc gttacctgat gaggttcagg 1981 ccaacatggg atacctgaga ctctgtagta acaaacaaac aaacaaacaa acaaacaaac 2041 aaacaaacat acatcataga tggatggatg catgaacagg tatagataga tagatagaca 2101 gacagacaga cagacataca gacagaaaga aatgaagaat gttgaacctt ttgaattagt 2161 tgatggcaaa ttaagaggaa gtggttggag accacgttta gtaatttacc tgtaaacaca 2221 gatctgagtc aggaatagtt cactgtgttt aagaaggata cactgcagtt tgctctcagg 2281 gaaatcttgt tttgttttca ccagtaaaaa atgccctagg aaggtatctt tcacagactg 2341 accatttgta taatagtgtc tgatggtatc gtaacatcta catatgaaca ggttttgtac 2401 ttcagacatg acatgttcat agccaaactg taaatcatat tcttttgtaa tatttagata 2461 aacctattta tatttattta tatccgtaaa cattttagtt ttaaatgtat atcaagaaga 2521 tttgtaataa aaatagaaat //