LOCUS AK159933 2000 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420038K17 product:FGF receptor activating protein 1, full insert sequence. ACCESSION AK159933 VERSION AK159933.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2000) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Takashi Ishikawa ( Department of Surgery 2 Yokohama City University 3-9 Fukuura,Kanazawa-ku,Yokohama 236-0004 Japan ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I420038K17 FEATURES Location/Qualifiers source 1..2000 /cell_type="osteoclast-like cell" /clone="I420038K17" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I420038K17" /db_xref="MGI:3565530" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" CDS 221..973 /codon_start=1 /note="FGF receptor activating protein 1 (MGD|MGI:2385286 GB|NM_145583, evidence: BLASTN, 99%, match=1183)" /note="putative" /protein_id="BAE35494.1" /transl_table=1 /translation="MYQVPLTLDRDGTLVRLRFTMVALITVCCPLVAFFFCILWSLLF HFKETTSTHCGVPNYLPSVSSAIGGEVPQRYVWRFCIGLHSAPRFLTAFAYWNHYLSC ASPCPGYRLLCRINFSLNVVENLALLVLTYVSSSEDFTIHENAFIVFIAASLGYMLLT CILWRLTKKHTDRKSYSWKQRLFVINFISFFSALAVYFRHNMYCEAGVYTIFAILEYT VVLTNMAFHMTAWWDFGNKELLITSQPEEKRF" regulatory 1981..1986 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 2000 /note="putative" BASE COUNT 448 a 542 c 464 g 546 t ORIGIN 1 caggacccgc ccccttccac tcgcccccgg gccgggctgg ggctcccggt tccgcgcccc 61 tggctacggg gtacggcccc ctatccacca gtacttgggg ccttttgctc gagattcctc 121 caggcactgc agatggaggc gtgggggagc cctggaatct cagactagtt ttgaatccca 181 gctctgccag ttactagctt gtggctttga gtctgacaag atgtaccagg tcccactgac 241 attggaccgg gatgggaccc tagtccggct ccgcttcact atggtggccc tgatcactgt 301 ctgctgtcca cttgtcgcct tcttcttctg catcctgtgg tccctgctct ttcacttcaa 361 ggagacaaca tctacacact gtggggtgcc caattacctg ccatcagtga gctccgccat 421 tggtggggag gtcccccaac gctacgtgtg gcgtttctgc attggcctgc actcggcacc 481 ccgcttcttg acagccttcg cctattggaa ccactacctc agctgtgcgt ctccatgtcc 541 gggttaccgc cttctctgcc gcattaactt cagtctcaat gtggtggaga acctcgcgct 601 gctcgtgctc acctacgtct cctcctccga ggacttcacc atccacgaaa atgctttcat 661 tgtgtttatc gcggcatccc tcggttacat gctcctcacc tgcattctct ggcggctgac 721 caagaagcac acagatcgca agtcctacag ctggaaacag cggctcttcg tcatcaactt 781 catctccttc ttctcggcgc tggctgtcta cttccggcac aacatgtatt gtgaggctgg 841 agtgtatacc atctttgcca tcctggagta cactgttgtc ctaaccaaca tggcgttcca 901 catgacagcc tggtgggact tcgggaacaa agagctgcta ataacctctc agcctgagga 961 aaagagattc taaccccgtc tgtgatgctg gaaaacaaga aaccactctg gctttcccta 1021 tctccacgtt ctctctgggc cctgggagag aagagcggga agggtatgac agggctgacc 1081 ccagcactgc tgacctctcc ccaccactca tggggatctt caagaagcat caccattcac 1141 tgaaaggtcc taaaaaactg agctggcagg aaagctccac cacttggtgc taaaaaaaaa 1201 aaaaggtcct gaggttcact aaggttaggg ttcagagcag tggctgctac ctgaagaccg 1261 cagccatttc tctctggtca ttcatctgag tgatgtgtct agtgatctac cgtgcacacc 1321 cagagtgtgt gcacccaggt ggtaggtcca taaatttgcc caggtgttca agatgtaccc 1381 tcttccccat cagtttcatt gtgttcctgt gtgtgtgact ggggaaagta cgctctatga 1441 tttctaaggg ctttgtttct tgaggttatc cagtggaagt agtattgtgc tttgtcttga 1501 cagaaaattt gtcccagaag aagcatcaag tataggatat atttttcttc cccatctaaa 1561 acttctagct ttttggaatt atgtctgtaa tcccagcatg ttggagggtc catgccaacc 1621 tgggcttcat aatgagacct tgtctcaaaa atgaagtaag atgccaggta tggtggcaca 1681 tgcctttaat cccaacacag cagagacagt caaatatctg ttgagttcaa gccagcctgg 1741 tctacagtta gtttcaggtg agccagggct atatagtaag acactgtttt agaaaaaaaa 1801 ataataataa taattaaagg accctaaaat cacaggctta taagaccttt ccctcctttg 1861 atcaggggga aggggtcaga ggtagatttc cctactccag aatgggttac ttggttttcc 1921 tttatcttct ctactgtccc aggtccccag cttttatttg tatattttat ttcaaaggac 1981 aataaatgtt tttcttttgc //