LOCUS AK158430 3418 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930116B21 product:endothelial PAS domain protein 1, full insert sequence. ACCESSION AK158430 VERSION AK158430.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3418) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Kirk W. Beisel ( Boys Town National Research Hospital 555 North 30th Street Omaha,NE 68131 USA ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F930116B21 FEATURES Location/Qualifiers source 1..3418 /clone="F930116B21" /db_xref="FANTOM_DB:F930116B21" /db_xref="MGI:3559702" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="inner ear" CDS 584..3208 /codon_start=1 /note="endothelial PAS domain protein 1 (MGD|MGI:109169 GB|NM_010137, evidence: BLASTN, 99%, match=3215)" /note="putative" /protein_id="BAE34506.1" /transl_table=1 /translation="MTADKEKKRSSSELRKEKSRDAARCRRSKETEVFYELAHELPLP HSVSSHLDKASIMRLAISFLRTHKLLSSVCSENESEAEADQQMDNLYLKALEGFIAVV TQDGDMIFLSENISKFMGLTQVELTGHSIFDFTHPCDHEEIRENLTLKNGSGFGKKSK DVSTERDFFMRMKCTVTNRGRTVNLKSATWKVLHCTGQVRVYNNCPPHSSLCGSKEPL LSCLIIMCEPIQHPSHMDIPLDSKTFLSRHSMDMKFTYCDDRILELIGYHPEELLGRS AYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQP QCIMCVNYVLSEIEKNDVVFSMDQTESLFKPHLMAMNSIFDSSDDVAVTEKSNYLFTK LKEEPEELAQLAPTPGDAIISLDFGSQNFDEPSAYGKAILPPGQPWAAGLRSHSAQSE SGSLPAFTVPQAGTPGNTTPSASSSSSCSTPSSPEDYYSSLENPLKIEVIEKLFAMDT EPRDPGSTQTDFSELDLETLAPYIPMDGEDFQLSPICPEEPLMPESPQPTPQHCFSTM TSIFQPLTPGATHGPFFLDKYPQQLESRKTESEHWPMSSIFFDAGSKGSLSPCCGQAS TPLSSMGGRSNTQWPPDPPLHFGPTKWPVGDQSAESLGALPVGSSQLEPPSAPPHVSM FKMRSAKDFGARGPYMMSPAMIALSNKLKLKRQLEYEEQAFQDTSGGDPPGTSSSHLM WKRMKSLMGGTCPLMPDKTISANMAPDEFTQKSMRGLGQPLRHLPPPQPPSTRNSGEN AKTGFPPQCYASQFQDYGPPGAQKVSGVASRLLGPSFEPYLLPELTRYDCEVNVPVPG SSTLLQGRDLLRALDQAT" BASE COUNT 757 a 1062 c 877 g 722 t ORIGIN 1 gattcgagag cggccggtgt acagctccgg agtccgcagc gctccgctcc agctctcctg 61 aggcggccgt acaatcctcg gcagtgtcct gagactgtat ggtcatctca gcggccgcac 121 tcgcttgccc ccggattttt ttccaacttg ctctcttcga gccatttttt tttctttttt 181 tctttttctt tttttctttt tcttttttgg ttggttggtt ttgatttgtc agatcccaga 241 aaagtgactc ctgttcgggg ctaaacggaa ctccaggtcc cttgtgctgc tctctctctc 301 ttttggcgtc ttacaacctc ctcccactcc tttccccggc cccgcctcct cctgcaggtt 361 cctccccgtc acccccctcc tccctcctcc tcctccgcac ctagccagcc ctctgcaaac 421 ttccacctga ttgagcggga ctctcggacc tgcgagcact aaagaccttt cacacctgcc 481 cgggcgacag agagctgcgg agggccacag caaagagagc ggctgcagcc cctacggggt 541 taaggaaccc aggtgctccg ggtctcggag ggccacggcg acaatgacag ctgacaagga 601 gaaaaaaagg agcagctcag agctgaggaa ggagaaatcc cgtgatgccg cgaggtgccg 661 gcgcagcaag gagacggagg tcttctatga gttggctcat gagttgcccc tgcctcacag 721 tgtgagctcc cacctggaca aagcctccat catgcgcctg gccatcagct tccttcggac 781 acataagctc ctgtcctcag tctgctctga aaatgaatct gaagctgagg ccgaccagca 841 aatggataac ttgtacctga aagccttgga gggtttcatt gctgtggtga cccaagacgg 901 tgacatgatc tttctgtcgg aaaacatcag caagttcatg ggacttaccc aggtagaact 961 aacaggacac agcatctttg acttcactca tccttgcgac catgaggaga tccgtgagaa 1021 cctgactctc aaaaacggct ctggttttgg gaagaagagc aaagacgtgt ccaccgagcg 1081 tgacttcttc atgaggatga agtgcacggt caccaacaga ggccggactg tcaacctcaa 1141 gtcggccacc tggaaggtcc tgcactgcac cgggcaagtg agagtctaca acaactgccc 1201 ccctcacagt agcctctgtg gctccaagga gcccctgctg tcctgcctta tcatcatgtg 1261 tgagccaatc cagcacccat cccacatgga catccccctg gacagcaaga ctttcctgag 1321 ccgccacagc atggacatga agttcaccta ctgtgacgac agaatcttgg aactgattgg 1381 ttaccacccc gaggagctac ttggacgctc tgcctatgag ttctaccatg ccctggattc 1441 ggagaacatg accaaaagtc accagaactt gtgcaccaag gggcaggtgg tatctggcca 1501 gtaccggatg ctagccaaac acggaggata tgtgtggctg gagacccagg ggacggtcat 1561 ctacaacccc cgcaacctgc agcctcagtg tatcatgtgt gtcaactatg tgctgagtga 1621 gatcgagaag aacgacgtgg tgttctccat ggaccagacc gaatccctgt tcaagccaca 1681 cctgatggcc atgaacagca tctttgacag cagtgacgat gtggctgtaa ctgagaagag 1741 caactacctg ttcaccaaac tgaaggagga gcccgaggaa ctggcccagt tggcccccac 1801 cccaggagat gccattattt ctctcgattt cggaagccag aacttcgatg aaccctcagc 1861 ctatggcaag gccatccttc ccccgggcca gccatgggcc gcggggctga ggagccacag 1921 tgcccagagc gagtccggga gcctgccagc cttcactgtg ccccaggcag gcaccccagg 1981 gaacactaca cccagtgctt caagcagcag tagctgctcc acgcccagca gccctgagga 2041 ctactattca tccttggaga atcccttgaa gatcgaagtg attgagaagc ttttcgccat 2101 ggacacggag ccgagggacc cgggcagtac ccagacggac ttcagtgaac tggatttgga 2161 gaccttggca ccctacatcc ctatggacgg cgaggacttc cagctgagcc ccatctgccc 2221 agaggagccg ctcatgccag agagccccca gcccaccccc cagcactgct tcagtaccat 2281 gaccagcatc ttccagccgc tcaccccggg ggccacccac ggccccttct tcctcgataa 2341 gtacccgcag cagttggaaa gcaggaagac agagtctgag cactggccca tgtcttccat 2401 cttctttgat gctgggagca aagggtccct gtctccatgc tgtggccagg ccagcacccc 2461 tctctcttct atggggggca gatccaacac gcagtggccc ccggatccac cattacattt 2521 cggccctact aagtggcctg tgggtgatca gagtgctgaa tccctgggag ccctgccggt 2581 ggggtcatcg cagttggaac ctccgagcgc cccgcctcat gtctccatgt tcaagatgag 2641 gtctgcaaag gacttcgggg cccgaggtcc atacatgatg agcccagcca tgatcgccct 2701 gtccaacaag ctgaagctaa agcggcagct ggagtatgag gagcaagcct tccaagacac 2761 aagcgggggg gaccctccag gcaccagcag ttcacacttg atgtggaaac gtatgaagag 2821 cctcatgggc gggacctgtc ctttgatgcc tgacaagacc atcagtgcga acatggcccc 2881 cgatgaattc acccaaaaat ctatgagagg cctgggccag ccactgagac acctgccacc 2941 tccccagcca ccatctacca ggaactcagg ggagaacgcc aagactgggt tcccgccaca 3001 gtgctatgcc tcccagttcc aggactacgg tcctccagga gctcaaaagg tgtcaggcgt 3061 ggccagtcga ctgctggggc catcgttcga gccttacctg ttgccggaac tgaccagata 3121 tgactgtgag gtgaacgtgc ccgtgcctgg aagctccaca ctcctgcagg ggagagacct 3181 tctcagagct ctggaccagg ccacctgagc cagggcctct ggcgggcatg cccctgcctg 3241 ccccgccgtc ttgacctgcc agcttcactt ccatctgtgt tgctattagg tatctctaac 3301 accagcacac ttcttacgag atgtactcaa cctggcctac tggccaggtc accaagcctt 3361 tatctgacat gctcacttta ttatccatgt tttaaaaata catagttgtt gtacctgc //