LOCUS AK157937 3717 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930010H20 product:hypothetical NUDIX hydrolase containing protein, full insert sequence. ACCESSION AK157937 VERSION AK157937.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3717) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Kirk W. Beisel ( Boys Town National Research Hospital 555 North 30th Street Omaha,NE 68131 USA ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F930010H20 FEATURES Location/Qualifiers source 1..3717 /clone="F930010H20" /db_xref="FANTOM_DB:F930010H20" /db_xref="MGI:3559209" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="inner ear" CDS 104..1075 /codon_start=1 /note="hypothetical NUDIX hydrolase containing protein (InterPro|IPR000086, evidence: InterPro)" /note="putative" /protein_id="BAE34271.1" /transl_table=1 /translation="MATEGLAGALATVLGGKGLLVQSCDSEPAGKPLFPVRLRKNVCY VVLAVFLNEQDEVLMIQEAKRECRGTWYLPAGRMEPGETIVEAMQREVKEEAGLLCEP VTLLSVEERGASWIRFVFLARPTGGVLKTSKDADSESLQAGWYPRVSLPTPLRAHDVL HLVELGAKFCQQAMHPLILPQELPCSVVCQRLVTTFTTVQSVWVLVGTVGTPHLPITA CGFTPMEQRGGIKVAILRLLQECLTLHSLAVETKGLLGLQHLGRDHVDGVCLNVLVTV AFRNPGIQDEPPKIRGENYFWWKVLEEDLQKLLLYRLQESSVIPLSR" BASE COUNT 846 a 950 c 996 g 925 t ORIGIN 1 gagaggaggg ggcgagggcg ccgcggccca ccgcagctca ggtcccggcc gcttgcctcc 61 gggggtctgg caggtcccgg cttgccacct ccccggagac ttgatggcca cggagggcct 121 ggcaggggcg cttgccaccg tgctgggggg aaaggggttg ctggtgcaga gctgtgactc 181 ggagccggct gggaagccgc tgtttcccgt gcggctgcgg aagaatgtct gctacgtggt 241 gctggccgtg ttcctcaacg agcaggatga ggtgttgatg atacaggagg ccaagaggga 301 atgccggggg acatggtacc tccctgcagg aagaatggaa ccaggagaaa ccatcgtgga 361 ggccatgcag cgggaggtga aggaggaggc agggctgctc tgtgagccag tgacactgct 421 gtccgtggag gagaggggcg cctcctggat ccgctttgtg ttcctcgctc gaccaacagg 481 cggagttctc aagacttcca aagatgctga ttctgagtcc ctccaggccg gctggtaccc 541 acgggtctcc ctgcccacac cgcttagagc ccatgatgtt ctgcacctgg tagagctagg 601 cgccaaattc tgccaacaag ccatgcaccc tctcattctg cctcaagagc tcccctgcag 661 tgtggtctgc caacggctgg tgaccacctt cacaacagtc cagtcggtgt gggtgttggt 721 gggcacggtg gggacacctc acttgcccat cactgcctgt ggctttaccc ctatggaaca 781 aaggggcggc atcaaggtgg ccatcttgag gctcctacag gagtgtctga ctctgcacag 841 tttggcagtg gagaccaagg ggttgcttgg gttgcaacac ctaggcagag accatgtgga 901 tggtgtctgc ctgaatgtgc tggtgaccgt ggcttttcgg aacccaggaa tccaagacga 961 gcccccaaag attcggggtg aaaactactt ttggtggaag gtattagagg aagatttaca 1021 aaaactgctt ctgtacagac tccaggaatc ttctgtgatc cccctgagca gatagagaga 1081 ttccagcagg gaccaaaagc tgagctgccc cctccctctg aggcagagaa aaggctggca 1141 gtcagggatc tcattgcaca ttttgagggg gcagggacca cacattgagc ccaaagggag 1201 ggtgtcttga atccactttt caagggctca gttctgaggg cacacagtac ttgtctttta 1261 agttggtgag gaactttttg aaccctaaat ggcaccatct ttgtccactt tggaaaaggc 1321 tgcatgtcaa tccttccaac cccataggaa tgtagagagg gatgggacat gggggacgca 1381 tccctcaggg cagagtcctc attgctgagt aaaaaggtat tgcttaacct gcctgcttgc 1441 ctaaatgtct gtgtggggag gatatggggc actgtcccac ccacagtcac ccaggtcttt 1501 cctcaccgtg tacacactga tgctatgcag ggatgtaagg atcctgaggc agacatcgat 1561 gctcgctgaa gcctcgaccc acccaggctc tttttagtgt tcctgtcctg tcagggcggg 1621 cgtgggactt tgaagtgacc acacccctaa taaaagcaca gctcagacct gtccaggtgt 1681 tgaacggttc ggtctggtga aactgcctag ggaacaagaa agagctgagg atgacacgtt 1741 ggcctctgcc agtctttttc tctttgagct tcctgggctc tgacctgttc cgtgtgctct 1801 cggacctggc tttttggttt ttgttcatgt ccctgtcctc agttcatgtc gcccaggcag 1861 actgtgaact cttataatgt agctggtgat gaccttgact catccagatt ctgcagaagt 1921 caagcccttt tatcaatggg ttacactccc aggccagcac aggattctgt tttcttgaga 1981 tagactctgc ccacatagac caggctgacc tcaatcaagt ttgttgtgat cttcctgcct 2041 ccaattcttg agtcctggga atacagatgt gctccagcat gctgctgctt atcattagca 2101 tcattattat tatctgatga aagcttcgga gctggcgagg tggctccgct cagcagttaa 2161 gagcatatgc ggctggctca tgctgaggac ctgagtttgg tttccagtcc ttgcaccaag 2221 tggctcacaa ccacctccag cttcaggctt tctgaaaccc tctctagcct ctgagggcac 2281 tcactcaatg tgtacatctc ctatgcagac atacataatt aaaaatagaa atgaaaatga 2341 aaatcaaaag cagttggagc aaaggaaatg tatcccatgt tgctaatcat cacattagat 2401 ttctgattct gagcaaggag acgcacttcc tagcattgct tttcacagag gacagtagct 2461 tgaggagcca gaaaaactcc ttgatccttt tcctagtgcc ccaggcctct ttggtaacca 2521 tcttgtctgg tctctagaaa gaggaatcct ccttagactc cctgaggaca tagtttccaa 2581 atgataaacc aaagcgaggt atgatggcac acacctttta tcccagcatt cgggaggcag 2641 aggcaggagg atctctagga atctatatag caagttccag gacagccagt actacatagt 2701 gaggccctat ttcaaaaact agaacaaaat aaatgaagtc ctttctattt tatttttgga 2761 gtgctgtggg ttgaacccag gggctcacac attttgggtt aagcaggcta cctaatggtc 2821 tcactgaaaa ccaaaacctt ttattcaggt caggactcct ccagttcccc cacacacaga 2881 gaagggcagt gacattcact gccaccattt agcctggtgg cttttgatcc tgagtacaca 2941 tcactgtcac ccagacagtt ctcagttctg tccacccact agggtgacta agctgctgaa 3001 accagctggg agctggcgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtctg 3061 tccaagcgca tgagcaggca catgcatgca cataagcaag agaaggaggg tgtcgggagc 3121 cctgttctat tgctttctac tttattcccg tgagacaggg tctggtctat cactgaacct 3181 ggagctagac tggcacactg caagctccag tgatcctcct gtctccttta cccatggctc 3241 taggacgtca gatgtgtacg cagccacacc ttggcttctt acctgggtga tgggaataca 3301 gagaaaccca tggctctgtt ggcactttca ccccctgagc catctcccca gctgggcacc 3361 agtatctcag aaagaagcct agattattct taaaaggtct ttttagattt ctgtttatgt 3421 gtgtgtgtgt gcacactcaa gtgcaggccc tcagaggcat cagatcccct ggagctggcg 3481 ctttgggcag ttgaaggctt ccttacattg gtgctgggaa gcaaacttag gtcctctgca 3541 gtaagtgtgt tactcactaa gctgcctctc caagtggttc tagtaggcac tattgaaacc 3601 ctgctgagga cctgcttctc aaatctccat tgcccgaccc cctggatact ctttatgatt 3661 cagaatactc attcccatac catttagaaa acagccgatg tgggagttgg gcaccgg //