LOCUS AK157029 1499 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830113F24 product:G protein-coupled receptor 18, full insert sequence. ACCESSION AK157029 VERSION AK157029.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1499) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by Dr. John Todd (Dept. of Medical Genetics Wellcome Trust Centre for Molecular Mechanisms in Disease Wellcome Trust/MRC building Addenbrookes Hospital Cambridge) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=F830113F24 FEATURES Location/Qualifiers source 1..1499 /clone="F830113F24" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:F830113F24" /db_xref="MGI:3558023" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="NOD" /tissue_type="activated spleen" CDS 141..1136 /codon_start=1 /note="G protein-coupled receptor 18 (MGD|MGI:107859 GB|NM_182806, evidence: BLASTN, 99%, match=1310)" /note="putative" /protein_id="BAE33938.1" /transl_table=1 /translation="MATLSNHNQLDLSNGSHPEEYKIAALVFYSCIFLIGLFVNVTAL WVFSCTTKKRTTVTIYMMNVALLDLVFILSLPFRMFYYAKGEWPFGEYFCHILGALVV FYPSLALWLLAFISADRYMAIVQPKYAKELKNTGKAVLACGGVWVMTLTTTVPLLLLY EDPDKASSPATCLKISDITHLKAVNVLNFTRLIFFFLIPLFIMIGCYVVIIHSLLRGQ TSKLKPKVKEKSIRIIMTLLLQVLVCFVPFHICFAVLMLQGQENSYSPWGAFTTFLMN LSTCLDVVLYYIVSKQFQARVISVMLYRNYLRSVRRKSVRSGSLRSLSNMNSEML" regulatory 1478..1483 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1499 /note="putative" BASE COUNT 388 a 409 c 320 g 382 t ORIGIN 1 gacagagaca ccacctacct aacacaggcg actctgagca ctctctctct gggactgggc 61 agagcggcaa acggtcacct ctcagacagc ctttgacaga caggaggttc tacataccat 121 gggagccagc ctgctgtaag atggccaccc tgagcaatca caaccagctt gatctttcta 181 atggctcaca cccagaggaa tacaaaatcg cagccctagt cttctacagc tgcatcttcc 241 tgattgggct gtttgttaat gtcactgcgt tgtgggtttt cagctgtacg accaagaaaa 301 gaaccacagt gaccatctac atgatgaacg ttgcactact ggacctcgta tttatactca 361 gtctgccctt tcggatgttt tactatgcaa aaggcgagtg gccatttgga gagtacttct 421 gccacattct tggggccctg gtggtgtttt acccaagcct cgctctgtgg cttcttgctt 481 tcattagtgc tgacagatac atggccatcg tacagccaaa atatgccaag gagctgaaga 541 acaccggcaa ggccgtgctt gcgtgtgggg gggtctgggt aatgaccctg accaccactg 601 tccccctgct actgctctac gaagacccag acaaggcctc ctccccagcc acctgcctga 661 agatctccga catcacccac ttaaaagctg tcaacgtgct caacttcacg cgactcatat 721 ttttcttcct gatccctttg ttcatcatga tcgggtgcta cgtggtcatc attcacagtc 781 tcctccgagg gcagacgtct aagctgaagc ccaaggtcaa ggagaagtcc atacggatca 841 tcatgaccct cctgctgcag gtgctcgtct gcttcgtgcc cttccacatc tgctttgccg 901 tcctgatgct acaaggacag gagaacagct atagcccctg gggagccttc accaccttcc 961 tcatgaacct cagcacctgt ctcgatgtag tcctctacta catcgtttcc aaacagttcc 1021 aggctcgagt catcagcgtc atgctgtacc gcaattacct tcgcagtgtt cgcagaaaaa 1081 gtgtccgatc gggcagttta cggtcactta gcaacatgaa cagtgagatg ctttgagtca 1141 gagcaagctg ccagtcttca gtctctttaa aattcttttc ctatctactt tcgggtgaac 1201 cagcattcta cactatccag tcccttctct aacaaagaga aataataatg atgaacttta 1261 aaaacttctg cggtattctg tgtattctag ccacatgatt aaaaactgag tattctgata 1321 tgctcattca ttcttatctg acaacttgta cgaaacatgt gcatgagcca tgtgtagtgg 1381 tcaggactgt gatccaaaca aacactggga agacgtagga aggccagtcc aggctacaca 1441 gtgaaactct gtctcaaaaa aaacaaaaac ccaaagtaat aaaaaataac acgttcatg //