LOCUS AK153177 1414 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830126J19 product:weakly similar to TNF-induced protein GG2-1 homolog [Mus musculus], full insert sequence. ACCESSION AK153177 VERSION AK153177.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1414) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by David A. Hume ( Depts. of Biochemistry and Microbiology/Parasitology Institute for Molecular Bioscience University of Queensland Brisbane,Q 4072 Australia ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I830126J19 FEATURES Location/Qualifiers source 1..1414 /cell_type="macrophage" /clone="I830126J19" /db_xref="FANTOM_DB:I830126J19" /db_xref="MGI:3570325" /db_xref="taxon:10090" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="bone marrow" CDS 108..668 /codon_start=1 /note="putative" /note="weakly similar to TNF-induced protein GG2-1 homolog [Mus musculus] (UniProt|Q8BTH4, evidence: FASTY, 55.7%ID, 93.4%length, match=555)" /protein_id="BAE31780.1" /transl_table=1 /translation="MDTFSTKSLALQAQKKVLSKMASKAMVAVFVDNTSSEVLDELYQ ATKEFTRSRKEAQRVVKNLVKVAVKLAVLLRADQLDSNELAQLQRFRGRVRSLAMTAL SFHQVDFTFDRRVLATGLLECRDLLHQAIGPHLTAKSHGRINHIFSNFANGDFMAALY SPAEPYRSHLCRICDGLGRMLDEGGI" BASE COUNT 318 a 398 c 389 g 309 t ORIGIN 1 cgcctcctag ccagcggccg ggctcagatc cagcggccaa tgcctctggc cccacagagg 61 cacctacaga aaactgaagg cttgacacat cccgaggagc agaacccatg gacaccttca 121 gcacgaagag cctggccctg caggcccaga agaaagtcct cagcaagatg gcttccaagg 181 ccatggtggc tgtgtttgtg gacaatacca gcagtgaggt cttggatgaa ctgtaccagg 241 ccacgaagga gttcacgcgc agccggaagg aggcacagag ggtagtgaag aacctggtga 301 aggtggctgt gaagctggct gtgttgctga gggcggacca gctggacagc aatgagctgg 361 cccagctgca gcggttccgg ggccgcgtcc gcagcctggc catgacagcc ctcagcttcc 421 accaggtaga cttcaccttt gaccggcgtg tgctggccac tgggctgctg gagtgcaggg 481 acctgttgca ccaggctatt ggcccgcacc tcactgccaa gtcccacggc cgcatcaatc 541 acatcttcag taactttgcc aatggtgact tcatggccgc gctgtacagc ccagcagagc 601 cctaccggag ccatctgtgc cgcatctgtg atggcctcgg gaggatgttg gacgagggtg 661 gcatctgacc tggagtcagc cacctggaga ctatcctcca ctggtgacgg tccccaagaa 721 ctcagaactg cctgtgcctg gggtagtctc tcctctgttt ctcctgctgt aacttatctg 781 cttttgtcta gcttctgctt cgtctcctga cctcctcttc ttacttctga gacaggtctc 841 atgtagccca ggctgacccc aaacacccta tgtagcaaag gctgaccttg acctcctgag 901 cctcctgccc ccaccaccga gagtgctgga tgataggtgt gtgccaacgc cccactgtct 961 ggacattctc agtctttcaa ataaggttgt ggagaattgg gagacaagaa ttgtactccc 1021 ctgaccctta cccctgccaa atgactatgt ttgtttccta agcctcaggt cgtcccaagg 1081 tgacttgctt tagaaaatgg agttcaaact cttgttgtac cagactagag ttgaacaagt 1141 actggactgc tacaacaggt ccttatgtat agattggccc aggaaggctc actctgccaa 1201 tgctgcagga cactggacac tgaggagtga tgctactgca aaccaagaac accagcagac 1261 agatgctgtg cggcagatcg tggcttctct caatggtttt gaaaggagag actccaagca 1321 cacttcggtg ttgggatctg aggtcctgtt aggggactgg accctcgcat tgaagagaag 1381 aaataaatag agccggtgag atggctcagc atgt //