LOCUS AK152438 1811 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830072F11 product:similar to Tetracycline transporter-like protein [Homo sapiens], full insert sequence. ACCESSION AK152438 VERSION AK152438.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1811) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by David A. Hume ( Depts. of Biochemistry and Microbiology/Parasitology Institute for Molecular Bioscience University of Queensland Brisbane,Q 4072 Australia ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I830072F11 FEATURES Location/Qualifiers source 1..1811 /cell_type="macrophage" /clone="I830072F11" /db_xref="FANTOM_DB:I830072F11" /db_xref="MGI:3569586" /db_xref="taxon:10090" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="bone marrow" CDS 191..1561 /codon_start=1 /note="putative" /note="similar to Tetracycline transporter-like protein [Homo sapiens] (UniProt|Q07706, evidence: FASTY, 80%ID, 100%length, match=1368)" /protein_id="BAE31219.1" /transl_table=1 /translation="MGWAGDAGCTPRPPIRPRPASERRVIIVLFLGLLLDLLAFTLLL PLLPGLLERHGREQDPLYGSWQRGVDWFASAIGMPAEKRYNSVLFGGLIGSAFSLLQF FSAPLTGAASDYLGRRPVMMLSLTGLAISYAVWATSRSFKAFLASRVIGGISKGNVNL STAIVADLGSPPTRSQGMAVIGVAFSLAFTLGPMLGAFLSVEMVPWISLLFAISDMLF IFCFLPETLPQEKRASSVTLGFHTAAHLLSPLALLRFAAVTHSQDPPAEHRLRNLRRL GLVYFLYLFLFSGLEYTLSFLAHQRFQFSSLQQGKMFFFIGLTMATIQGTYARRISPG KEAAAMTRAMLLLVPAFLLIGWAHSLPTLGLGLMLYSFAAAVVVPGLSTLVSSYGSPG QKGTIMGILRSLGALGRALGPVVAASVYWLTGAQVCFTVCSALFLLPFLLLWKLKHPA ETSKEE" regulatory 1790..1795 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1811 /note="putative" BASE COUNT 311 a 583 c 485 g 432 t ORIGIN 1 gaggtgggaa gcaaaggttt cgatatcgtg tgaggaggcc gaagtggtac acgaacagga 61 gctcagggcg cctacgactc cccaaccagg gattcccgtc ttctccccgt tacccgcttc 121 acaacagggg gcgccctgac cactgcggcc ctgagcttac tgctgcccta gcagggtcgg 181 agcttccacc atgggctggg caggggatgc gggctgtacg cctcgtccgc ctatacggcc 241 tcggcccgcg tccgagcgtc gcgtgatcat cgtgctcttc ctcggcctgc tactcgacct 301 cctggcgttc acgctgttgc tgcctctgct gcctgggctg ctggagagac acggccgcga 361 acaagacccc ctctatggct cctggcagcg tggggtagac tggtttgctt cagccatcgg 421 gatgccagcg gaaaagaggt acaacagtgt cctgttcgga ggtctcatcg gctcggcctt 481 ctccctcctg cagttcttct ccgcaccact cacaggagct gcctctgatt acctggggag 541 gcgcccagtg atgatgttgt ccctgacagg tttggccatc tcctatgcag tgtgggctac 601 ctctcggagc tttaaggcct tcttggcctc cagggtgatc ggaggcatca gcaaggggaa 661 cgttaacctc tccacagcca ttgtcgctga cctgggctca cctccaaccc gcagccaagg 721 catggcagtc atcggggtag ccttctcctt ggcctttact ctgggtccca tgctgggagc 781 attcctgtct gtggaaatgg tgccctggat cagcctactt tttgccatct ccgacatgtt 841 gttcatcttc tgtttcttgc cagagacact gccccaggaa aagcgggcat cttctgtcac 901 cctgggcttc cacactgctg cccacctgct cagccccctg gccctgcttc gctttgcggc 961 tgtcactcac agtcaggacc cgcctgctga gcacagactc agaaacttac gccgtttggg 1021 tcttgtctac ttcctctacc tcttcctgtt ctcaggcctg gagtacacac tcagcttcct 1081 ggcacatcag cgcttccagt tcagcagcct gcagcagggc aagatgtttt tcttcatcgg 1141 cctcaccatg gccaccatac agggcaccta cgcccggcgg atcagccctg gcaaggaagc 1201 tgcagctatg acgagggcaa tgctgctgct agtaccagcc ttcctcttaa ttggctgggc 1261 acactcgctg cctacgttgg gcttgggact gatgctctac tcctttgctg ctgctgttgt 1321 ggtgcctggt ctgtccacct tggtctccag ttatggttct ccagggcaaa aaggcacaat 1381 catgggcata ctgcggagcc taggcgccct aggcagggcg ttggggccgg tggtggctgc 1441 ctcagtgtac tggctgactg gggcccaggt ctgcttcact gtgtgctcgg ccctctttct 1501 gctccccttc ctactcctgt ggaagctgaa gcatccagca gagacttcca aggaggagta 1561 gctgagctgc cacacccaac cccagctgtc tggctgccag gtgggaacct gggcccagac 1621 cactcagctc ctagcacact cctcccaccg ggcccaggga ggctcgccac gcccctcctc 1681 tctctggatg gcaacccagc aggaagcctg ggcagctaca cccttttctt actccaaaac 1741 cttttaggct tccagaattt tttttatatc ttattcttct gaatgaccaa ataaagcagc 1801 tattttgtac c //