LOCUS AK151564 2945 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830031M13 product:myotrophin, full insert sequence. ACCESSION AK151564 VERSION AK151564.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2945) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by David A. Hume ( Depts. of Biochemistry and Microbiology/Parasitology Institute for Molecular Bioscience University of Queensland Brisbane,Q 4072 Australia ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I830031M13 FEATURES Location/Qualifiers source 1..2945 /cell_type="macrophage" /clone="I830031M13" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I830031M13" /db_xref="MGI:3568712" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="bone marrow" CDS 147..503 /codon_start=1 /note="myotrophin (MGD|MGI:99445 GB|AK083888, evidence: BLASTN, 99%, match=2942)" /note="putative" /protein_id="BAE30506.1" /transl_table=1 /translation="MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAAD CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGL TALEATDNQAIKALLQ" regulatory 2917..2922 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 2945 /note="putative" BASE COUNT 837 a 572 c 604 g 932 t ORIGIN 1 ggcagaagaa ctttctcccg cccgaaccgt agccgcgacc cgcagtctcg cccgctcagc 61 ggcctgaggc gcgtcgcttt ctcgtgtccc ctcgtcgggc ctaatcgccg ctcctgcccg 121 gcccgccgga ccaccccgct gcagtcatgt gcgacaagga gttcatgtgg gccctgaaaa 181 acggagactt ggatgaggtg aaggactatg tggctaaggg agaagatgtc aaccggacac 241 tagagggtgg aaggaagcct cttcattatg ctgcagattg tggacagctt gaaatcctgg 301 aatttctgct gctgaaagga gcagatatta atgctccaga taaacatcat attacccctc 361 ttctgtctgc tgtctatgag ggtcatgttt cctgcgtgaa attgcttctg tcaaagggtg 421 ctgataagac tgtgaaaggc ccagatggac tgaccgccct tgaagccact gacaaccagg 481 caatcaaagc tcttctccag tgatagatgg atggacggac tgataacttg ggaaggatga 541 ctctcctgtg gcctcacact gctgcctgtc tgtctgtcac tttctatctg ccagcttctt 601 cagctaaata ctttaagagg gtgaagggag agagaaattc ataacaaatc agactgccag 661 gggaggggaa taaaacatgt tttggaggag cagtggggaa tgtgatgaga cttttactgg 721 gattcctgat caaaccagcc tgtttttcat ttccagtaaa atatacagct tattcccaag 781 ggagagcaaa aatacagtct attggaatca ttggaccttc tcagctccct agctaattta 841 ttaattagtt tattgaaggt ctgactatac aaggccaact ctacttattt ggtagcccta 901 gctgtgagca gtagtggctg ctgttatgtc aacatagggt gctgagataa gcaattagct 961 atagccttct gccttaagaa tgcactctcc tgggggctcc tggctagtta agagcggtta 1021 gtgaccaaaa tctctctaga atgacgttaa tctttacata agagcttaga taaggtaagg 1081 agcagcgcac tcctgaattg ctggatgact aaactttgga ttttctctcc cctttcacat 1141 caatttcatg tctctttaga taaaactgac tagttttatt tataaaatgt taaattttag 1201 gagcctaaag gaggaatcat tccagtaggc ttatttcttt ttttctcctt tagactcaga 1261 catttatata acattgaaac actttgagac tccttctggt agtaaaggag atttaaaaat 1321 aaaatcatag ccataagcgt gttagtatct tataaagaga gaacagttgt cttagtacct 1381 atggagtttc ttcatttgct atttgagtga gccagccttc gttgtgtttg gagaatgaag 1441 aatattcttt ggaatgcctc tcaaaaaccc accatggatg ctgattttat agtgcaccaa 1501 aggtatcact ggggtgagat gtactgtatt tggacagatg ggacctcatc ccttcaaaaa 1561 cattcttgtt accatgttct cctgagctgg taatagactc ttgctgggcc agtaccaccc 1621 cacctgcatg gtgtttttat cttaacaatc attctttgca tacatgtgac aacttcaaaa 1681 tgcattctgt gttcttataa tacagtgccc taaaatggta ttcctaggac ctgcagataa 1741 gagaaactta tctctaactt tttctttcat ggacaatgaa atgaattaaa acatacaacc 1801 ttaaatttga tggcctacac tttaagtatt aagatgtctt ttgcttttaa tttgccatct 1861 atacaggatt acaaaaacta ttagaatctt tccatagcca atcatgcaat aattgaatgt 1921 acctcaaatt tttaaagggt aggtgatggg atagggactt ataatcacat tagggataat 1981 aatattaaaa acctaactga ttttttttaa ggcattgtag cattatatag cagggttaaa 2041 ctattactaa gaacaatcag cctggctaat aactattaat cagttgataa ttggttgggg 2101 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgttctccca tgaactcttt 2161 tttatcctgt ggctttttca ctttcaacta gcctgcccct gtagtttttc tatgtccaag 2221 aaaacaatca caaaacagta gtttaaatac tttgatatat ttggctagct ctgctgtttt 2281 aatgcagcct actagagttg gatatcctac acttaatctt aaccaaaagg ccaagcagct 2341 atagagttgg acattctgct aggaagtgga aggcacatga tcagtctatg agtcaatata 2401 atgcaacagg gtgttttgag acctttgttt tcacctcttg gcatactatt ttaaaggctt 2461 gaattttacc ctttacacaa ttttcaattt ttctttcaaa gtcttctgtt atagttggct 2521 attgcagagt gtatattgtc ttatcattcc agaacttggg tctgctttct acagtcatta 2581 tggtaccaaa accatatgat tctttgtaca gtttatccca gtgttccttg taatgcagta 2641 gaggctattt tgccttcccc ctttgttggc cattttgtaa acccatagct atgaagtgat 2701 tgcttgagaa aatagcatat aaacatagac taggatagac tgaccaggat ggtttacagt 2761 ttctttaaaa aaataataaa caaaaataaa caaaaaaaaa aactaggtta tttataatgt 2821 atttctgaac cacttggcag agaaattcat gacacttaat gttaatattt ttgaataaat 2881 gaagctaaaa tgtctgcttt tggtacaaca cgcattaata aaaggttaag ttttgttttc 2941 caccg //