LOCUS AK150465 1106 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830008B10 product:Px19-like protein, full insert sequence. ACCESSION AK150465 VERSION AK150465.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1106) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Tissues were provided by David A. Hume ( Depts. of Biochemistry and Microbiology/Parasitology Institute for Molecular Bioscience University of Queensland Brisbane,Q 4072 Australia ) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=I830008B10 FEATURES Location/Qualifiers source 1..1106 /cell_type="macrophage" /clone="I830008B10" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:I830008B10" /db_xref="MGI:3567613" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="bone marrow" CDS 155..808 /codon_start=1 /note="Px19-like protein (UniProt|Q8R107, evidence: FASTY, 99.5%ID, 100%length, match=651)" /note="putative" /protein_id="BAE29582.1" /transl_table=1 /translation="MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSKHVLTEDILHREV TPDQKLLSRRLLTKTNRMPRWAERLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINH ARLMVVEERCVYCVNSDNSGWTEIRREAWVSSSLFGVSRAVQEFGLARFKSNVTKTMK GFEYILAKLQGEAPSKTLVETAKEAKEKAKETALAATEKAKDLANKAATKQQQRQLV" regulatory 1082..1087 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1106 /note="putative" BASE COUNT 251 a 328 c 303 g 224 t ORIGIN 1 gctataaccc ctgatggcgg cggtagggac ctgggcgcgg tcctgcggag attgagctgc 61 gagcctggcg ggcgtgcgcc tagccacgtc ccccccaccc ccgggctctt caccctgatg 121 ctgcacgggt gctgagcccg tccgggtcgg gacgatggtg aagtatttcc tgggccagag 181 cgtgctccga agttcctggg accaagtgtt cgccgccttc tggcaacggt acccgaatcc 241 ctatagcaaa catgtcttaa ccgaagacat actgcaccgg gaggtgaccc ccgaccagaa 301 gctactgtcc cggagactcc tgaccaagac caacaggatg ccacgttggg cagagcgact 361 gtttcctgcc aacgttgctc actccgtgta catcctggag gactctattg tggaccccca 421 gaatcagacc atgaccacct tcacctggaa catcaaccat gcccggctga tggtggtgga 481 ggaacgatgt gtttactgtg tgaactctga caatagcggc tggaccgaaa tccgtcggga 541 agcctgggtc tcctctagct tatttggcgt ctccagagct gtccaggaat ttggtcttgc 601 ccggttcaaa agcaatgtga ccaagacaat gaagggcttt gaatacatcc tggccaagct 661 acaaggtgag gccccttcca aaacccttgt tgagacagcc aaagaggcca aagagaaagc 721 aaaggagacc gcactggcag ctacagagaa ggccaaggac ctggccaaca aggccgccac 781 caagcagcag cagcggcagc tcgtataact cgcttcctct ccctctcccc agtgtacgtg 841 attattaaag agcaacctgc agccctctct gctgtctggg gtggtgggtc agggccctgt 901 cctggtcagc atctgcacca cacccagctc tgtctgccgg gcagaggggt gcagtgactt 961 gcccaaggtc acagcagtgc gcaggtgata gactgtacgc tccaagaggg cagggctcct 1021 tgttttattc tctgctgtgt cccaagtacc ctgaacaata tttagcacat aacaggcact 1081 caataaacac atgatttgat tagccc //