LOCUS AK148406 2852 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370137F12 product:hypothetical Initiation factor eIF-4 gamma, MA3/ARM repeat fold containing protein, full insert sequence. ACCESSION AK148406 VERSION AK148406.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2852) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Cells were provided by Drs. William J Pavan and Stacie Loftus and Denise Larson (Division of Intramural Research Genetic Disease Research Branch National Human Genome Reseach Institute National Institutes of Health (NIH) Building: 49, Room 4A82 49 Convent Drive MSC 4472 Bethesda,Maryland U.S.A) whose assistance we gratefully acknowledge. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=G370137F12 FEATURES Location/Qualifiers source 1..2852 /cell_type="B16 F10Y cells" /clone="G370137F12" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:G370137F12" /db_xref="MGI:3560486" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" CDS 16..2580 /codon_start=1 /note="hypothetical Initiation factor eIF-4 gamma, MA3/ARM repeat fold containing protein (InterPro|IPR003891 InterPro|IPR008938, evidence: InterPro)" /note="putative" /protein_id="BAE28535.1" /transl_table=1 /translation="MPRNVPEVNGVYRHGACELWCRAMAHALLKRSGVRRGLGGREGP LKRLRLAVEDFVRTTSESEACESRSAVARSRPGGRKSRKELRKEKRHLRKARRLQRTV GSGSGDQGGNVGLNDGPETRRPPTEVRPTPAKATATPAKASAPSTNTKASAAQPKAKA KGAPGKPGPATATARKRALLAANEEEDREIRKLERCLGLHKRKKKGDGSSVPLSFARD GLDYILGALECGSGGGLYESSEEEEEEKLETGQTVLESDLESNSKESEEDPDWQVLQE DQEDVNSKRRGEAESGTRGNKGTKKVRFAEVVDKSRSSSEDDIEQQESHSVESGEKYI PPRLRNEEVIDVHKKEELDRLKKHVKGLINRLSEPNMASISGQLEELYMAHSRKDMND TLTTALMDACVTASAMPSRLMMEHVFLVSILHHTVGIEVGACFLEAVVKKFDAIYRDG GEGKELDNLFTMIAHLYNFHVVQSILIFDILKKLVGTFTEKDIELILLMLKNVGFALR KDDALSLKELITEAQTQASGAGNKFQDQNRVRFMLETMLALKNNDLRKIPGYNPEPVE KLKKLQRTLVRNAGSGSETRLRISWDGILNAEQTGRWWIVGSAWSGTPMIDNSHHIQL QKPLAGMASSKMLELARKQRMNTDVRRIIFCTLMTSEDFLDAFEKLLKLGLKDQQERE IVHILMDCCLQEKTYNPFYAFLASKFCDYERRFQMTFQFSIWDKFRDLENLPDTKFSN LVHLLAHLLRTKSLPLSVLKVVEFSELDKPRVHFLRRVLTALLMETEDDDLAVIFSRV SDNPKLGMLREGLKLFIGHFLLKHTQAHQSAEEASLLREKAGLASKSLQGKAILRM" BASE COUNT 787 a 626 c 826 g 613 t ORIGIN 1 gcccttccgg aagtgatgcc gcggaacgtc ccggaagtta acggcgtcta taggcatggg 61 gcttgtgagt tgtggtgtag agcaatggca catgctctct tgaaacgtag cggcgtccgc 121 cgcggtctgg gcggcaggga gggtcccctg aaacggctgc ggctggccgt ggaagacttc 181 gtgcggacta cctccgagag cgaagcctgc gagagccgca gcgctgtggc gcgctcccgg 241 cccggcggcc gaaagagccg caaggagctt cgtaaggaga agcgacacct gaggaaagcg 301 cggcgcctgc agaggacagt aggctccggg tcaggggacc aaggggggaa tgtcggcctt 361 aacgatggcc cggagactcg acgaccgccc actgaggtga gaccgacgcc cgccaaggcc 421 acagcaaccc ctgccaaggc cagtgccccc tccactaaca ccaaggcctc ggcggcccag 481 ccgaaggcca aggctaaagg tgctcctgga aagcctggtc ccgccaccgc caccgcccgg 541 aagcgggcac ttctagcggc caacgaggag gaggaccgag agatccgaaa gctggaacgg 601 tgcctcggcc tccacaagcg taagaagaag ggcgatggta gctcggtgcc gctcagcttc 661 gcgcgcgacg gtctggacta catcctgggg gccctggaat gtgggagcgg cggcggcctg 721 tacgaaagca gcgaggaaga ggaggaagaa aagttggaga ctggacagac agtcttggag 781 agtgacctag agagcaattc taaagaaagt gaggaggacc cagactggca agtgctgcag 841 gaggatcagg aagatgtaaa ctcgaaaagg agaggagaag cagaaagtgg gactcgggga 901 aataaaggga ctaagaaagt gcgttttgca gaagttgtag acaagagcag aagctcttcg 961 gaagatgaca tagaacagca ggagagtcac tctgttgaaa gtggtgaaaa gtacatccct 1021 cctcggctga ggaacgagga ggtaatagat gtccacaaga aagaagagct agacaggctc 1081 aagaaacatg ttaaaggcct aattaacagg ttgagtgagc caaacatggc ttctataagt 1141 gggcagctag aggagctgta catggcccac agcaggaagg acatgaacga taccctgacc 1201 actgccctca tggatgcctg tgtcactgcc tcagccatgc ccagcagact gatgatggag 1261 catgtcttct tagtcagcat cctccaccac acggtcggaa tagaggttgg tgcttgcttc 1321 cttgaagctg tggtaaagaa gtttgatgct atctatagag atggaggtga ggggaaagaa 1381 ctggacaacc tctttaccat gattgcccat ttgtacaact tccacgtggt acagtctatc 1441 ctcatctttg acattttaaa gaagcttgtt ggaactttta cggaaaaaga cattgagctg 1501 atcctgttga tgctgaaaaa tgtgggcttt gcattgagaa aagatgacgc cttgtcactt 1561 aaggaactga tcacagaagc ccagacccag gccagtggtg caggcaacaa gtttcaggac 1621 cagaacaggg tacggtttat gttggaaaca atgctggctc tgaagaacaa tgacctgcgt 1681 aaaatccctg gttataatcc tgagcctgtg gaaaaactga agaagttaca aagaactctg 1741 gttcgaaatg ctggctcagg ttctgagact cggcttcgca tctcctggga tggcatcttg 1801 aatgcagagc agactggtcg ctggtggatt gtggggtctg catggagtgg gaccccaatg 1861 attgacaaca gtcatcacat acaacttcag aagccacttg caggcatggc tagctctaag 1921 atgctggagc ttgcgaggaa gcagagaatg aacactgatg tcaggaggat catattctgc 1981 actttaatga caagtgagga cttcttggat gcctttgaaa agctgctgaa gcttggactg 2041 aaggaccagc aggagagaga gatagttcat atcctcatgg attgctgtct gcaagagaaa 2101 acctacaacc ctttctatgc tttcctggcc agcaaattct gtgactatga aaggagattc 2161 cagatgactt tccagttcag catatgggac aaatttcggg acttagaaaa tttgccagac 2221 actaagttct caaatctggt tcatctgctg gcacacttgt tgaggaccaa atcacttcca 2281 ctttctgttc taaaggtagt tgaattcagt gaattggata aacccagagt tcacttccta 2341 cggagggtgt tgactgcact gttgatggaa actgaagacg acgacttggc tgtaattttt 2401 tcaagagtgt ctgacaaccc aaagctggga atgttgcgag aaggcctgaa gctcttcatt 2461 ggccacttct tactgaagca cacacaggct caccagagtg ctgaggaagc cagtctgctg 2521 agagagaagg ctggccttgc atctaagtct ttacagggca aagccatcct gagaatgtag 2581 ccagagtata gggagcattt gaccaagaga tgtggtttgt gaattcaagg cagtcctgcc 2641 tctaagaaca ggaggattat gccatgcttt gtcagggttt aaatattgta ttttcagatt 2701 tttagagtat tatgtacttc aaatgtatat gtatgtatat agcaggtcag gggaaagggg 2761 gagaaaagat taagccatga ggagagggtt gggaccataa attgatgact attttttatc 2821 ttctaaaatg ttggttaaaa gtttaaaaac cg //