LOCUS AK145216 2083 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930022B11 product:phosphoserine aminotransferase 1, full insert sequence. ACCESSION AK145216 VERSION AK145216.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2083) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=G930022B11 FEATURES Location/Qualifiers source 1..2083 /cell_line="RCB-0527 Jyg-MC(B)" /clone="G930022B11" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:G930022B11" /db_xref="MGI:3563229" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /tissue_type="mammary gland" CDS 53..1165 /codon_start=1 /note="phosphoserine aminotransferase 1 (MGD|MGI:2183441 GB|AK049855, evidence: BLASTN, 99%, match=2077)" /note="putative" /protein_id="BAE26305.1" /transl_table=1 /translation="MEATKQVVNFGPGPAKLPHSVLLEIQKQLLDYRGLGISVLEMSH RSSDFAKIIGNTENLVRELLAVPNNYKVIFVQGGGSGQFSAVPLNLIGLKAGRSADYV VTGAWSAKAAEEAKKFGTVNIVHPKLGSYTKIPDPSTWNLSPDASYVYFCANETVHGV EFDFVPDVKGAVLVCDMSSNFLSRPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLG FSLRECPSVLDYKVQAGNNSLYNTPPCFSIYVMGMVLEWIKNNGGAAAMEKLSSIKSQ MIYEIIDNSQGFYVCPVERQNRSRMNIPFRIGNAKGDEALEKRFLDKAVELNMISLKG HRSVGGIRASLYNAVTTEDVEKLAAFMKNFLEMHQL" regulatory 2059..2064 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 2083 /note="putative" BASE COUNT 499 a 491 c 519 g 574 t ORIGIN 1 ggttcgcgtg gtctctgctc ctgccacttc ccctgcttgt cgccttagca ccatggaagc 61 caccaagcaa gtggttaact ttgggcccgg gcctgccaag ctgccacact cggtattgtt 121 ggagatccag aagcagctac tagactacag aggactcggc atcagtgtgc tcgaaatgag 181 tcacaggtcg tcagattttg ccaagattat tggcaataca gagaatcttg tgagggaatt 241 gctagctgtt cccaacaact acaaggtgat ctttgtacaa ggaggtgggt ctggccagtt 301 cagtgctgtc cccttaaatc tgattggcct gaaagctgga aggagtgctg actacgtggt 361 gaccggagct tggtcagcta aggctgcgga agaagccaag aagtttggaa cggtgaacat 421 tgtccaccct aaacttggaa gttacacaaa aattccagac ccaagcacct ggaacctcag 481 cccggacgcc tcctatgtat acttctgtgc aaacgagact gtgcacgggg tggagtttga 541 cttcgtacct gacgtcaagg gagcggtgct ggtctgtgac atgtcctcaa acttcttatc 601 caggccggtg gatgtttcca agtttggtgt gattttcgct ggtgctcaga agaatgttgg 661 ctccgccggg gtgacggtgg tgattgtccg ggatgacctg ctggggttct cgctcagaga 721 gtgcccatca gtccttgact acaaagtgca ggctgggaac aactctttgt ataacacacc 781 tccgtgcttc agcatctacg tcatgggcat ggtcctggaa tggatcaaga acaacggcgg 841 ggccgcagcc atggagaagc tcagctccat caaatcccaa atgatttatg agatcattga 901 taattctcaa ggattttatg tatgcccagt ggagcgccag aatagaagca ggatgaacat 961 cccatttcgc attggcaacg ccaaaggaga cgaagctttg gaaaagcggt ttcttgacaa 1021 ggcggtagaa ctcaacatga tctccttgaa ggggcacagg tcagtgggag gcattcgtgc 1081 ctctctgtat aacgctgtca caaccgaaga cgttgagaag ctggcggcct tcatgaagaa 1141 tttcttggag atgcatcagc tgtgaacatg accagccacg ctctgcctgt gagcagcacg 1201 cagcatcgtt tagagtaact tgggattgac tacagaaact taacagacat ggattttttt 1261 ttcccaaata catgcttatt acagattcct ttctcaaaga ataacgacta aacatcaggg 1321 cactgcagag ctgaggaaac tcccagctaa cggccacctt cattctcatg tgacctggaa 1381 gcattttgaa agctttcttt cctgttgctc ttctaagtga attcagcctg tcagccatct 1441 ttgctgcccc cttctctagg tggactgcct tgggctttgc cctgctggtt ccaactggtt 1501 attattagga ggttggaggc cctgtgggct ggattgacag cagtgagttt gctgggttcc 1561 gcagcagttg gttcaagtca acagcgactc acgagcgttt tggatctgtg tactgcaatt 1621 cccataaaga gataggtggt gttatgctgt gtttatgtag tgggtattgt tttaaacacc 1681 gtacggttta tgcctatgcc tttatatttc taatgaaaca gttttgttca gcccatgact 1741 ttgtgcatga ctgtcgtccg ttctagtcac ctgtgctctc catctactgc cttttaaagc 1801 tgcgtcatga gaaggatcta cacgttccac catgactctt ttcttgccac aagtagaaga 1861 aatggttgat tctttgcttt tcggttaggc cgttaaacaa aactcagtca cacccctgcc 1921 ttccaccctc aaactgtgat cacgtggctg ttcttgtagt ttaaccaggg caacactata 1981 tattccaggt ctatacattg ctgaggtctt tttctggttg ttcatgtatc agtgttttca 2041 atcgactgca tggaaaacat taaagtccta agtcatctaa gcc //