LOCUS AK142554 967 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630033D09 product:homolog of human MLLT2 unidentified gene, full insert sequence. ACCESSION AK142554 VERSION AK142554.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 967) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=D630033D09 FEATURES Location/Qualifiers source 1..967 /clone="D630033D09" /db_xref="FANTOM_DB:D630033D09" /db_xref="MGI:3549693" /db_xref="taxon:10090" /dev_stage="0 day neonate" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="kidney" CDS 168..>967 /codon_start=1 /note="homolog of human MLLT2 unidentified gene (MGD|MGI:1100819 GB|AF074266, evidence: BLASTN, 100%, match=798)" /note="putative" /protein_id="BAE25103.1" /transl_table=1 /translation="MAAHSSLYNEDRNLLRIREKERRNQEAHQEKEAFPEKAPLFPEP YKTAKGDELSSRIQTMLGDYEEMKEFLSSKSHPHRLDGSEDRPGKPRYPLGHDRGNGA ASSSLRTHVYHQPIHTSAPGSRPVGNISHSPKMAQPRMEPSLHTKIYDGPRLTQDHLS QGHCSRKCDRRAEGDSAPERKLSPLISSLPSPVPPLSPVHSRLQGTSKAHSSGVSSKS CCVAKSSKDLVAKAQDKETPHDGLVAVTSLGSAPPQPPCQTFPPPPLPP" BASE COUNT 235 a 292 c 272 g 168 t ORIGIN 1 gaggcggtgc tgaggacaca gagctgagga cgcggctgcc gagagcgcag agtctgcggg 61 gcagtatcgc cgacggctgc ggccgacgct gagagcggcg cgggcgagag agcctgcggg 121 gcgagcgcgc agatggattt gggacgccag gcagtgtgag ccgagccatg gcagcccatt 181 ccagcttgta caatgaagat agaaacctgc ttcgaatcag agagaaggaa agacgcaacc 241 aagaagctca ccaggagaag gaggcatttc ccgagaaggc tcccctgttt ccagagcctt 301 acaagactgc aaaaggcgat gagctatcaa gtcggatcca gaccatgctg ggtgactatg 361 aggagatgaa ggagttcctg agcagcaagt cccaccccca ccgcctggat ggctctgaag 421 acaggcccgg gaagcccaga tatcccttag gtcatgacag ggggaacggg gctgcatcca 481 gctccctccg cacacatgtc taccaccagc ctatccacac ttctgctccc ggatcacgtc 541 ctgtcggtaa cattagccac agtccaaaga tggcacagcc aaggatggag ccaagtctcc 601 acaccaaaat ctatgatggc ccacgtctga ctcaagacca cctcagtcag ggacattgtt 661 ccagaaagtg tgaccgaaga gctgaaggag actctgctcc cgagaggaag ctctcgccct 721 tgatctcctc tttgccatcc ccggtgcccc ctctatcacc tgtacattcc aggctgcagg 781 gaaccagcaa ggctcacagc agtggcgtta gcagtaaaag ctgctgtgtg gccaagtctt 841 ccaaggactt ggtggcgaag gcccaagata aagagactcc tcatgacggt ttggtggcag 901 ttaccagcct tggatcagcc cctcctcagc caccttgcca gacatttcca ccccctcctc 961 tcccccc //