LOCUS AK139788 3026 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
clone:B020017C02 product:weakly similar to Exonuclease GOR (EC
3.1.-.-) (Antigen GOR) [Pan troglodytes], full insert sequence.
ACCESSION AK139788
VERSION AK139788.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3026)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004)
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B020017C02
FEATURES Location/Qualifiers
source 1..3026
/clone="B020017C02"
/db_xref="FANTOM_DB:B020017C02"
/db_xref="MGI:3544826"
/db_xref="taxon:10090"
/dev_stage="2 cells"
/mol_type="mRNA"
/note="clone_lib: RIKEN full-length enriched mouse cDNA
library"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="egg"
misc_feature 1..3026
/note="putative"
/note="weakly similar to Exonuclease GOR (EC 3.1.-.-)
(Antigen GOR) [Pan troglodytes] (UniProt|P48778,
evidence: FASTY, 57.8%ID, 64.1%length, match=789)"
BASE COUNT 779 a 751 c 698 g 798 t
ORIGIN
1 gacacccact ctggtaggca aattgctcgc actagagctg cagtctcctg ggcagcatga
61 gcctgaaagc tacagcgaaa agttggttcc caccagagca ttctgaagcc aggagagtcc
121 tggttcatcc agtcgggaac ttcctgatgt cttactacca gtgcccccca tcttgttgcc
181 ggaccaacca gctcatcgtg atccaggtgc cttccctgag gcctggccct ggggcacacc
241 acagctggct tgcagtacct tcggagcagc aacactggcg accccgactg gtcgggagga
301 agatactctg ctctgagacg ttgacgacga ccacgtcttc ttcctcttcc tcgtcgtcat
361 cttcctccct gtcatcatcc tcagccttag ctggagagaa caagagtctc atcctcatgg
421 ctagccccag ccttgccaac accacaactg ccaagaggac caccaccacc accaccagca
481 gcagcagcag cagcagcagc agcagcagca gcagcagcag cagcagcaac aacagcagag
541 ccacaggtca gccgccacac ttcaacacct atactccaca gcaagctgtc tacagctata
601 cttttttcgg aatgaagaag cccatcctca ccaaggagtt taaggacatg atccctgttg
661 ccttgcgcca gcactacttg ggcttgttca ctgaggagtg cctcaagttc tcctcttcgc
721 atctggaggc cattgagaag gcccagttag aggagaaagt gatctacgac caaagtccca
781 gcaagaacaa gtacctgaat gtcgctctgc acaccctgaa gaggctcagg ggcctggttc
841 ccagcgccat tcctggtttc agcaaggcca ctttgtacag ccgcctgaag ggctatctgc
901 tctgagccct gcgtgtacca ctgggggcgt gtcgtctcca tcccggtgga ggaaggctgg
961 caggtgcgct actcgtgctg ctccgcgccc atggaagcca ctggctgcaa ggtggccaag
1021 caacacgtgc aggacggcag gaaggacaac ttgcatggct ttgccaagac cttcccgaag
1081 acggactggg aagcgcatgc gggaatcttc gcgctggact gtgagatgtc ctataccaca
1141 cacggcctgg agctcacccg cgtcacagtg gtggacactg acttaaacgt ggtttacgac
1201 accttcgtca agcctgatca tgagattgtg gactacaaca ccatgttttc cggagtgacc
1261 gaggcagacc tggtggatac caaagttagg ctgtgtgatg tccaggccgt gcttcttagc
1321 atgttcagca ctgaaaccat cctcattgga cacagccttg agagtgacct gctggctttg
1381 aagttcatcc atgacactgt ggtggacaca tccgtgctct tccctcacca gcggggcctc
1441 ccctacaagc gctccttgag gagcctcatc tctcagtacc tcagccggat gatccagaca
1501 caaagcggtg gccacagctc catcgaggat gccagagcct gcatgcagct ggtgatctgg
1561 aagatgcaag aagacgccaa gacctctagc ccctctctgc cgcaggccac ttgccaaaag
1621 agcaactctc tgccgaagct gccggtttgc cctagccgat acacccagac gcccaaaatg
1681 ctggagatgc ctgagatgcc caagatggaa gacatcttgt acccggaggg aagtgattca
1741 gatcaacctt cccagctaga gacgtgagga cttctctgtg ttgattacag atgcgtaggt
1801 gaggagtggg tgccatacag ttgttaaaag ttttaatcca agcctgaaac cttgcagagt
1861 tatacggtgt tgctcgccaa ggctgggtac tgcttgccgt tttgtgggtg agaaagttct
1921 tcatacagaa tagaatgact ctagttaagt ctcatcacag ccaactaaag ggaggaggaa
1981 gtatttcggc cgattccaga actttctcac agagctgacc aaagaaaaca gcctgcctgc
2041 cgtagaggtg agaccatttt gatttgccaa gtgtcactgg aactgttagc tatgacttta
2101 actttgccta agtagaagct aacactccta gtttgccagg tcctcagtgt gtcaagaaga
2161 tcgatgaaat ttgttggaaa ttactagttc caagcaacac tgataatctc gtaatttcca
2221 ggttgtttta ttttattttg ttttgttctt ggagttgaaa tagtttaata atttttttag
2281 atgacgtaac ttcttttctt ctactttata aataaatttc atttataaaa tacatcaatt
2341 ataaaaatgc aagtggtttt tgaatgattt tcggaatttg gttgaaagtg tattgaatta
2401 tttagaaata ttagaaaatg ctgtagaccc aaacaccctt tatctcttat gattcttttt
2461 ttttttttaa accagaaaat ctaatgcact tttgtcttaa ctgtgaagag agccacccta
2521 gctgtgttaa aggtcattct ctgttattgt atgaaggcta atgcaagcta ttgtgtttta
2581 gaatgcaagg ggagaaaata actagtttta actacccacc ttttaggtgg agtagggtaa
2641 gtttaataag aaatgttagt gtttgtacgt gtcagtaaaa ccttaaactc tatactcaag
2701 gcaggaaaat tagctcatta gcattaattt gtgttaaaat gttcaaaatg gaaatagagc
2761 acttaatact gttctccccc tcccggtgtg gcccagagct ggctttgatc ttgtttctgt
2821 tacctttaga gtgggactat aggtgtgaat taccatgcct ggctaatgtc cctcaactgc
2881 tttttcaaaa gtaaattcta aattaccaga gcaaaaaaac ctaaaccaaa cattctattc
2941 tttggattaa taactcttgc ctgtgtgcgt tttggtttgc aattttatat atatttttct
3001 caaataaaag ttttgttttg tttttt
//