LOCUS AK135871 1586 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420431D24 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, full insert sequence. ACCESSION AK135871 VERSION AK135871.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1586) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=7420431D24 FEATURES Location/Qualifiers source 1..1586 /clone="7420431D24" /db_xref="FANTOM_DB:7420431D24" /db_xref="MGI:3538651" /db_xref="taxon:10090" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="in vitro fertilized eggs" CDS 36..>1586 /codon_start=1 /note="SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 (MGD|MGI:99603 GB|BC056199, evidence: BLASTN, 100%, match=1568)" /note="putative" /protein_id="BAE22708.1" /transl_table=1 /translation="MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPEL WALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR LKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMN TIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRAT NHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFL LSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETL NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCE EEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKD PVKEDVEKA" BASE COUNT 438 a 366 c 454 g 328 t ORIGIN 1 tgggtacttc taatgaggag attcggtgga agtacatgat cgtggacgaa ggccaccgga 61 tgaagaatca ccactgcaag ctaacccagg tcctgaacac acactatgtg gcccccaggc 121 ggatccttct gactgggacc ccactgcaga ataagcttcc ggaactctgg gccctcctca 181 acttcctcct ccctacaatc ttcaagagtt gcagcacatt tgagcagtgg tttaatgctc 241 catttgccat gaccggtgaa agggtggacc tgaacgaaga agaaacgatt ttgatcatca 301 ggcgtctaca caaggtgctg agaccctttt tactgaggag gctgaagaaa gaggttgagt 361 ctcagcttcc ggaaaaggtt gagtatgtga tcaagtgtga catgtcagct ctgcagaaga 421 ttctgtaccg tcacatgcaa gccaagggga tcctcctcac ggacgggtct gagaaagata 481 agaaggggaa aggaggtgcc aagacactta tgaacaccat catgcagctg agaaaaatat 541 gcaaccaccc atatatgttt cagcacattg aggaatcctt tgctgaacac ctgggctatt 601 cgaatggggt catcaatggg gctgagctgt atcgggcctc gggaaagttt gagctgcttg 661 atcgtattct gcccaaattg agagcgacta accaccgcgt gctgcttttc tgccagatga 721 cgtcactcat gaccattatg gaggattact ttgcttttcg gaacttcctg tacctgcgcc 781 ttgacggcac caccaagtct gaagatcgtg ctgctttgct aaagaaattc aatgaacctg 841 ggtcccagta tttcattttc ttgctgagca caagagcagg gggcctgggc ttaaatcttc 901 aggcggcaga cacggtggtc atatttgaca gcgactggaa tcctcaccag gatctgcagg 961 cccaagaccg agctcaccgc attggccaac aaaacgaggt ccgggtgctg aggctttgca 1021 ccgtcaacag tgtggaggaa aagattctcg cggctgccaa gtacaagctg aacgtggatc 1081 agaaggttat ccaagcaggc atgtttgacc agaagtcatc cagccacgag cggagggcct 1141 tcctgcaggc cattctggag cacgaggagg agaatgagga agaagatgag gtaccagacg 1201 acgagaccct gaaccagatg attgctcgcc gggaggaaga atttgatctt tttatgcgca 1261 tggacatgga ccggcggagg gaggatgccc ggaacccgaa gcgcaaaccc cgcttgatgg 1321 aggaagatga gctgccctcc tggattatca aggatgacgc cgaagtggaa aggctcacct 1381 gtgaagaaga ggaggagaag atatttggga ggggctctcg ccagcgccgg gatgtggact 1441 acagtgatgc cctcaccgag aagcaatggc tcagggccat cgaagacggc aatttggaag 1501 aaatggaaga ggaggtacgg cttaagaaga gaaaaagacg aagaaatgtg gataaagacc 1561 ccgtgaagga agatgtggaa aaagcg //