LOCUS AK135435 3820 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820420L10 product:superoxide dismutase 2, mitochondrial, full insert sequence. ACCESSION AK135435 VERSION AK135435.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3820) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=6820420L10 FEATURES Location/Qualifiers source 1..3820 /clone="6820420L10" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:6820420L10" /db_xref="MGI:3537425" /db_xref="taxon:10090" /dev_stage="12 days embryo" /mol_type="mRNA" /organism="Mus musculus" /sex="female" /strain="C57BL/6J" /tissue_type="mullerian duct includes surrounding region" CDS 197..865 /codon_start=1 /note="putative" /note="superoxide dismutase 2, mitochondrial (MGD|MGI:98352 GB|NM_013671, evidence: BLASTN, 100%, match=1166)" /protein_id="BAE22531.1" /transl_table=1 /translation="MLCRAACSTGRRLGPVAGAAGSRHKHSLPDLPYDYGALEPHINA QIMQLHHSKHHAAYVNNLNATEEKYHEALAKGDVTTQVALQPALKFNGGGHINHTIFW TNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQ IAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYT ACKK" regulatory 3798..3803 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 3820 /note="putative" BASE COUNT 931 a 800 c 864 g 1225 t ORIGIN 1 ggccttccca ggatgccgct ccgttatgcg ccgggccgtc cgtgtcgccg tcctcccctc 61 cgctgatggg cgctgcgggc agggtcaccg cttcgctgtg tccttgcgga cgccgggcgg 121 acgctgccta gcagacgcgc gcctgcgagc gaacggccgt gttctgagga gagcagcggt 181 cgtgtaaacc tcaataatgt tgtgtcgggc ggcgtgcagc acgggcagga ggctgggccc 241 tgtggccggt gccgcgggct cccggcacaa gcacagcctc ccagacctgc cttacgacta 301 tggcgcgctg gagccacaca ttaacgcgca gatcatgcag ctgcaccaca gcaagcacca 361 cgcggcctac gtgaacaatc tcaacgccac cgaggagaag taccacgagg ctctggccaa 421 gggagatgtt acaactcagg tcgctcttca gcctgcactg aagttcaatg gtgggggaca 481 tattaatcac accattttct ggacaaacct gagccctaag ggtggtggag aacccaaagg 541 agagttgctg gaggctatca agcgtgactt tgggtctttt gagaagttta aggagaagct 601 gacagccgtg tctgtgggag tccaaggttc aggctggggc tggcttggct tcaataagga 661 gcaaggtcgc ttacagattg ctgcctgctc taatcaggac ccattgcaag gaacaacagg 721 ccttattccg ctgctgggga ttgacgtgtg ggagcacgct tactaccttc agtataaaaa 781 cgtcagacct gactatctga aagctatttg gaatgtaatc aactgggaga atgttactga 841 aagatacaca gcttgcaaga agtgaaacct cactcacggc cacattgagt gccaggctcc 901 gggctggttt atagtagtgt agagcattgc agcactatga ctggggtgct gtagtcttta 961 ttgatgtctt tccacatacc tgataattct atgataattt cttattttaa ttaaatctat 1021 tcttaggcaa ctatttgaga acagcgcata ctctgtgtga attgctcttg attgaacatt 1081 ttcgttagag ccttgaattg cttggatgct atagctgtca ttataagacc atcagaaata 1141 tcccatctct gttttggggg gcctgtagga gagtctgtaa tcctgttcta ctgcagttag 1201 aaaaaaagtt gagttgttcc cccctgcccc ctgagttgtt gaatagtgaa atagagaacc 1261 aaatagttct cttttctatt aaaaattgct attttatgta agtaatcctc tatttagtgg 1321 acatcaccta gtagtctttg tttatggtca cagtttcaca gtacaccatt tttttcactc 1381 aaactctgta actcaaggct gtgaatggag ttcagtggta gagccttgcc tgtcttatgc 1441 aaggccctgg gctctacctc agtaatgaaa aaaggtcaac agacatagct ttgctcctgc 1501 ttgaggagtg cttattatga gaggaaggta atggtgcctc tgggttttct ataggcagac 1561 atgcaaaaac agctaatctt gtctttacaa accaacagtg tgctgtatga atgtgttcaa 1621 gatggacaaa gtaggtaggg cctgtccgat gatgtcagcc atgggcacta ggccacaggg 1681 cattctggga agccattcag ccccatgaat tgtatatctc tggagaactg gaccctgggt 1741 gtggtggcac ctttctcagt agcggcaaat gggtttctga gtgaggtcag tagggtgtct 1801 tcagaacatt agtttttaga gacacagatt tttcattttt ctttagtttc aagaacttac 1861 agtcacaaga gggcctttgt attgttattc aatagaaggc tgccctttcc ctgacaaggt 1921 gacacagtgc ttctgactgt gttcctgtgc actgtggaga tatctgtcac aggggtcctt 1981 agtgaatttg ccttttcaca ttcgtctcac catcttcctg tcatccttaa tgtccatgtg 2041 atgttttatc ggttgctcaa tagtcaatag tttgttggtg tttaattgtt gtttattacc 2101 aaaaaggccg tgggcgcctc tcatgcatgc aaatccttgt tagtggagta ttttttaaag 2161 gtttgttttc tttttaatta tgcatgtctg tgtatgttct gttcattgtg cccatggaag 2221 acagaagagc ttgttgggtc tgggtccctt agagctggag aagttacagg tggccttgag 2281 cggggacttg gatcatctgt gagagcaata agcacttgcc cgctgagcca tctttccagc 2341 ccccggaatt tttttttttt ttttaatatt gattgttttc ttaaacgtat tttgtaattt 2401 gtcccaagtt tttttttttt tttttttttt tttggctttt tgagacaggg tttcattgtg 2461 tatccctggc agtcctggaa ctcactttgt agaccaggct ggcctcgaac tcagaaatcc 2521 gcctgcctct gcctcccgag tgctgggatt aaaggcgtgt gccaccacac cctgctcttt 2581 ttcttttttt aaaaaagatt tattttattc atatgagtgc aatgtagctg tcttcagcca 2641 caccagaaga aggcattgga tcccattaca gatggttgtg tgccactctg tgtttgctgg 2701 gaattgaact caggaccttt ggaagagcag tcagtgcttt taaccgttga gtcatctctc 2761 cagcctggac cctctttttt ttttttcttt ttcccctaat tgaaaatact tctttttata 2821 caatatattc tgatcatgtt ttcccttctc caactcctct cagatcctcc ctacctcccc 2881 acccacccaa atccacacct tttctttctc cctcccatta gaaaacagtt aacaacacac 2941 acacacacat gaataggaca aaacagacct ttttattatt ttaaacagag aatctcagtg 3001 ctcactcgtg tcatcttttc ctttcttaga gtagattttg ataaaaagat agtcatacaa 3061 gcacaggcag cttttatatg cccaaaccta tcgtgtccat ttggaatttt aatacttgga 3121 tttctgactg gcagcattta gggttccctt gcttttaatc tagtggcaag ttgtttcata 3181 acagtacagc atactgttaa ttcctgagtg tgtatacgtt tctttggctc attgggtcct 3241 tgttatattt aatgttgtag acagcattac tgaactgttt tgatggtgta ctatttttaa 3301 ccatttagtg aaataggctt actattaaac attaatttat aaggacatta caattcagac 3361 aaggaattat aattcctaag tatgtgaatt tgtaataaga tctctttaga tcagcgaagc 3421 ccctgtttat ctgagaggcg ccgcctgcca tgagtaccat ggacagtgat tttactgagt 3481 ctaatgttta ggccttccag tgtttaaaac tgttttattg caagtttggc agagatgacc 3541 tcggtgagtt catggtgcag ttaacgtgat ttttatgcca tatttgctga tttttacaga 3601 ttaaatttaa aaaattacat ttacaaaatt gttgttttga ggaatattgt tgttgatttt 3661 gtttgttttg ttttgagtga ctgttagtat tcttgaatac tgttagacct gacaggatta 3721 gctgtagtaa attatcagtt ttaaaggtga gtgttgtttt attgtaaaat gcatgtttta 3781 gatatttgga aaatactaat aaaagcaaag gtaacaaagc //