LOCUS AK133342 2754 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932437G23 product:hypothetical Zn-finger, RING/Zinc finger RING-type profile/Serine-rich region profile containing protein, full insert sequence. ACCESSION AK133342 VERSION AK133342.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2754) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=4932437G23 FEATURES Location/Qualifiers source 1..2754 /clone="4932437G23" /db_xref="FANTOM_DB:4932437G23" /db_xref="MGI:3534653" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="testis" CDS 306..2735 /codon_start=1 /note="hypothetical Zn-finger, RING/Zinc finger RING-type profile/Serine-rich region profile containing protein (InterPro|IPR001841 PROSITE|PS50089 PROSITE|PS50324, evidence: InterPro)" /note="putative" /protein_id="BAE21609.1" /transl_table=1 /translation="MMHPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTVLGKA KRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVA RARIQHLPPRQPTEYFDMGIFLAFFVVVSLVCLILLVKIKLKQRRSQNSMNRLAVQAL EKMETRKFNSKSKGRREGSCGALDTLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHR KCVDPWLLQHHTCPHCRHNIIEQKGNPGAVCVETSNLTRGRQPRVTLPVHYPGRVHRT NAIPAYPTRTSMDSHGNPVTLLTMDRHGEQNLYSPQTPTYVRGYPPLHLDHTLAPHRC SLEHRAYSPAHPFRRPKFSSRSFSKAACFSQYETMYQHYYFQGLSYPEQEGQTIPSVT PRGQSRAFPPSGASSLLFPTMVHVAPPTHVESGSTSSFSCYHGHRSVCSGYLADCPGS DSSSNSSGQCRCSSSDSVVDCTEVSNQGVYGSCSTFRSSLSSDYDPFIYRSRGPAVHL EGSPPPEELPAGHSQSAGRGEPWLGPASPSGDQLSTCSLEMNYSSNSSLEPRGPNSST SEVGLEVSPGAALDLRRTWKWGPEGPSCACCFEPQPFPPGSGIETSAGGSSLFLGPRL LEDCNPPSGEPQLGSSQGLYGLHSDHYPRTDGVKYEGLPCCFYEEKQVAHSAGRGNGC YTEDYSVSVQYTLTEEPPPSCYAGPRDLSQRIPIIPEDVDCDLGLPQDCHGMHNHSPW GGALSLDVPRLHWSLGTTREEEQAPCYQAEVQPGCSPEEAGASRASLSSAPQDTQESH ALAAEASGENR" BASE COUNT 632 a 818 c 726 g 578 t ORIGIN 1 gagagacaag tgactgtgtg tgtcagcgtc catctttctt cttgctctgc actggtcctg 61 gtcagaaatg ttgaacttga ctggcctcca cctgcttccc tttcctggga ccacagagcc 121 ttgaccctgc atggggctat ctggctatat tttctccaag tgctttcacc atgcttcctc 181 ttgatcattg gtgactatgg ctctcaaaat tggtgcaaaa tgaagattag cttttctcta 241 gtcatcacaa tagctgtacc aacctctctt tccaatagct tcacagtgag cattttgacc 301 atagtatgat gcacccacta ggcctatgta ataacaatga cgaagaggac ttgtatgaat 361 atggctgggt aggagtggtg aagcttgaac agccagaatt ggaccccaaa ccatgtctca 421 ctgtcctggg caaggccaag agagcagttc agcggggagc tactgcagtt atctttgatg 481 tatctgaaaa tccagaagcc atcgaccagc taaaccaagg ctcagaagac cctcttaaga 541 ggccagtggt gtatgtgaag ggtgcagatg ctatcaagct gatgaacatt gtcaacaagc 601 agaaagtagc tcgagcaagg atccagcacc tccctcctcg acaacccacc gagtactttg 661 acatgggaat tttcctggcc ttcttcgtcg tggtctcctt ggtctgcctc attctccttg 721 tcaaaatcaa gctgaagcaa cgtcgtagtc agaattccat gaacaggctg gctgtgcagg 781 ctctggagaa gatggaaacc agaaagttca actccaagag caaggggcgc cgggaaggaa 841 gctgtggggc cctggacaca ctgagcagcg gctccacatc cgactgtgcc atctgtctgg 901 agaagtacat tgacggagag gagcttcggg tcatcccttg tactcatcgg ttccacagga 961 agtgtgtgga tccatggcta ctgcagcacc acacctgccc ccactgtcgg cacaacatca 1021 tagaacaaaa gggaaatcca ggtgctgttt gtgtggagac aagcaacctt acacgtggtc 1081 ggcagccaag agtgacccta ccggtacatt acccaggccg tgtgcatagg accaatgcca 1141 tcccagccta ccctactagg acaagtatgg actcccatgg caaccctgtc acactgctaa 1201 ccatggaccg gcatggggag cagaacctct attctccaca aacacccacc tatgtccgtg 1261 gctacccacc cctgcacctg gaccacactc tggcccctca tcgctgcagc ctggaacacc 1321 gggcctactc accagcccat cccttccgca ggcccaagtt cagcagccgc agcttctcca 1381 aggcggcttg cttctcccag tatgagacca tgtaccaaca ctactacttc cagggtctca 1441 gctacccaga gcaggagggc cagacaatac ccagcgtcac acccaggggc caatcccgtg 1501 ccttcccacc aagtggtgcc agcagcctgc tcttccccac aatggtacat gtggcccctc 1561 caacccacgt ggagagtggc agcacatcta gcttcagttg ctatcatggg caccgttctg 1621 tgtgtagcgg ctacctggct gactgtcctg gcagcgatag cagcagcaac agctctggcc 1681 agtgccgctg ctcttccagt gactccgtgg tggactgcac agaagtcagc aaccaaggtg 1741 tgtatgggag ctgttccacc ttccgaagct ccctcagcag cgactatgac cccttcatct 1801 accgcagccg ggggcctgct gtgcaccttg agggctcccc tccaccagag gagctcccag 1861 caggacacag tcaaagtgct gggaggggcg agccatggct aggccctgcc tctccctcag 1921 gggaccagct gtccacctgc agcctggaga tgaactacag cagcaactcc tcgctggaac 1981 ccagagggcc caacagctct acctcagaag tggggctcga ggtttctcct ggggctgccc 2041 tggacctcag gaggacctgg aaatggggtc cagagggacc atcatgtgct tgctgcttcg 2101 agccccagcc cttcccgccg ggctctggga tagaaacaag tgcaggtggc agcagtttat 2161 tcctgggtcc tcggctcctc gaggactgca accctccaag tggggagcca cagctgggga 2221 gctcccaggg cctgtatggt cttcactcag accattatcc taggacagat ggggtgaaat 2281 atgagggctt gccctgctgc ttctatgaag agaagcaggt ggcccacagt gctggcaggg 2341 gcaatggctg ctacactgag gactattcag tgagtgtaca gtacacactc accgaggaac 2401 ccccacccag ctgttatgca gggccccggg acctgagcca gcgcatcccc attattccag 2461 aggatgtaga ctgtgacttg ggcttgcccc aagactgcca cgggatgcac aaccacagcc 2521 cctggggtgg ggcactgagc ttggacgttc cccgactcca ctggagtcta ggcacaaccc 2581 gggaagagga acaggctcca tgttaccaag ctgaggtgca gcctggctgc tctccagagg 2641 aggcaggtgc ttccagggct agcctctcca gtgcccccca ggacactcag gagtctcatg 2701 ccctggctgc tgaggcttca ggtgagaaca gatgacagta gtatttgtat aagg //