LOCUS AK101487 2346 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033042D19, full insert sequence. ACCESSION AK101487 VERSION AK101487.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2346) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2346 /clone="J033042D19" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 60..2297 /db_xref="Osa1:LOC_Os02g49332" /db_xref="RAP-DB:Os02g0725300" /note="(RAP Annotation release2) Cellulose synthase family protein" /note="(Rice Genome Annotation Project) CSLE2 - cellulose synthase-like family E, expressed" /note="mapping to R02-TIGRv4S1-001280F (Chr.2: short arm=30142988, long arm=30147946, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG95085.1" /translation="MAGSGGGVVSGGRQRGPPLFATEKPGRMAMAAYRVSAATVFAGV LLIWLYRATHLPPGGGDGVRRWAWLGMLAAELWFGFYWVLTLSVRWCPVYRRTFKDRL AQSYSEDELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDYLPEKLNIYLSDDAGSVL TFYVLCEASEFAKHWIPFCKKYKVEPRSPAAYFAKVASPPDGCGPKEWFTMKELYKDM TDRVNSVVNSGRIPEVPRCHSRGFSQWNENFTSSDHPSIVQILIDSNKQKAVDIDGNA LPTLVYMAREKKPQKQHHFKAGSLNALIRVSSVISNSPIIMNVDCDMYSNNSESIRDA LCFFLDEEQGQDIGFVQYPQNFENVVHNDIYGHPINVVNELDHPCLDGWGGMCYYGTG CFHRREALCGRIYSQEYKEDWTRVAGRTEDANELEEMGRSLVTCTYEHNTIWGIEKGV RYGCPLEDVTTGLQIQCRGWRSVYYNPKRKGFLGMTPTSLGQILVLYKRWTEGFLQIS LSRYSPFLLGHGKIKLGLQMGYSVCGFWAVNSFPTLYYVTIPSLCFLNGISLFPEKTS PWFIPFAYVMVAAYSCSLAESLQCGDSAVEWWNAQRMWLIRRITSYLLATIDTFRRIL GISESGFNLTVKVTDLQALERYKKGMMEFGSFSAMFVILTTVALLNLACMVLGISRVL LQEGPGGLETLFLQAVLCVLIVAINSPVYEALFLRRDKGSLPASVARVSICFVLPLCI LSICK" BASE COUNT 571 a 546 c 616 g 613 t ORIGIN 1 gacccactcc tctgaagtcc cagtgccatc tgctccatac ttcgcaggta ggagggagca 61 tggcggggag cggcggcggc gtcgtctccg gcggccgcca gcgcgggccc ccgctgttcg 121 cgacggagaa accggggcgg atggcgatgg cggcgtaccg ggtgtccgcg gccacggtct 181 tcgcgggagt tcttctgata tggctgtaca gagccactca cctgcctccc ggtggcggcg 241 acggcgtgcg gcggtgggcg tggctcggga tgctcgcggc ggagctctgg ttcggcttct 301 actgggtcct gacgctgtcc gtgcggtggt gccccgtcta ccgccgcacc ttcaaagacc 361 gcctcgctca aagctacagt gaagacgagc ttcccagtgt ggacattttt gtctgtacag 421 cggatccaac agcagagcca ccgatgcttg tcatctccac tgttttgtct gtcatggctt 481 atgactacct gcctgagaag ctgaacatct acttatctga tgatgctggt tcggttttaa 541 cattctacgt tctatgcgag gcatccgagt ttgcaaagca ttggattcca ttttgcaaga 601 agtacaaggt ggaacccaga tcaccagctg cttactttgc taaagtagct tcccctcctg 661 atgggtgtgg acctaaagag tggtttacca tgaaggaact gtacaaagac atgacagatc 721 gtgtgaactc agtagtaaat tcaggtagga tccccgaggt tccacgatgc cattccagag 781 gcttctcaca gtggaatgag aatttcactt ctagtgatca cccttctata gttcagattt 841 taatcgatag taacaaacaa aaggcagttg atattgatgg aaatgcattg ccaacacttg 901 tatatatggc acgtgagaag aaaccccaga aacagcatca cttcaaagct ggatctttga 961 atgctttgat aagggtatca tcagtgataa gcaacagtcc aatcatcatg aatgttgatt 1021 gtgatatgta ctcaaacaat tcagagtcca tcagagacgc attgtgtttt ttcctagatg 1081 aagagcaagg ccaagatatt ggttttgtac agtatcctca gaattttgaa aatgtggtgc 1141 acaatgacat ctatggccac ccaatcaatg ttgtcaacga gttggatcat ccttgcttgg 1201 atggttgggg tggaatgtgt tactatggca ctggatgctt ccatcggaga gaggccctat 1261 gtggacgaat ctatagtcaa gaatataagg aagattggac tagggtagca gggagaacag 1321 aagatgctaa tgagttggaa gaaatgggca ggtcacttgt gacttgcaca tatgagcata 1381 acaccatctg gggaattgag aagggggtta ggtatgggtg cccactggag gatgtaacta 1441 caggattaca aatccaatgc cgtggatgga gatcagtgta ctacaacccc aaaagaaagg 1501 gattcttagg catgacaccc acctcactag gccagatcct ggtcctgtac aagagatgga 1561 cagaagggtt cctccaaata tccctctcac ggtacagccc cttcttatta ggtcatggga 1621 agatcaagct gggtcttcaa atgggctact ctgtctgcgg cttctgggcc gtgaacagct 1681 tccccacctt gtactatgtc acaattcctt ctctttgctt cctcaatggc atctccctct 1741 ttcctgagaa aactagcccc tggttcatac cctttgcgta cgttatggtg gccgcatact 1801 cctgcagctt agcagagtca ctgcaatgtg gtgacagtgc agtggagtgg tggaatgcac 1861 agaggatgtg gctcattaga aggatcacct catacctcct ggcaaccatc gacacattcc 1921 gcagaatatt gggcatctct gagtctggat tcaacctgac agtgaaggtc actgacttgc 1981 aggccttgga gaggtacaag aaggggatga tggaattcgg atccttctcg gcgatgtttg 2041 taatccttac gacagttgcg ctgctcaacc tggcatgcat ggtgttagga attagtagag 2101 ttttgttaca agaaggccca gggggtttgg aaactttgtt tctccaggct gttctgtgtg 2161 tactgatagt agccatcaat tctccggttt atgaggcgct cttcctccgc agggacaagg 2221 gcagcttgcc agcttctgtc gctcgagttt ccatttgctt tgtgttgcca ctctgtatac 2281 tctcaatatg taaatgatat tacgtacagt atgtacaatg ctatatatca ggaagaaatt 2341 aaactt //