LOCUS AK100285 3414 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023075D23, full insert sequence. ACCESSION AK100285 VERSION AK100285.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3414) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3414 /clone="J023075D23" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 88..3246 /db_xref="Osa1:LOC_Os07g09020" /db_xref="RAP-DB:Os07g0188000" /note="(RAP Annotation release2) Similar to Argonaute 4 protein" /note="(Rice Genome Annotation Project) argonaute-like protein, putative, expressed" /note="mapping to R07-TIGRv4S1-000191R (Chr.7: short arm=4701277, long arm=4710817, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG94531.1" /translation="MASRGGDGLVGGGRGPLGGRDGRGRGPAGGRGGGRGGGHPQQQQ QQQPGYGRGDGGGRGPAPAAGGVVGRGTGGGGGGGRGDGGRGRGRGGGGGDGVRPAMA AAPAASTPGPVAVAARSTPPPTPAVQIPAVASSSSAQPAAAAQPPPAAAAVSALARDV GRQLAVVAGGGRPAPPAAPPAPIPVSSKGVAPPSRPGFGTVGERIVVRANHFLVRVSD NDMIYLYDVSLSPPPKTRRINRVVMSELARLHRESHLGGISFAYDGSKALYTAGKLPF DSMDFKIKLGKELREIEYKVTIRRAGQADLHHLHEFIAGRQRDSQQQTIQALDVVLRE SPSLNYVIVSRSFYSTMFGRQDIGDGLECWKGYYQSLRPTQMGLSLNIDISSTPFFKP ISVVEYVKNCLGTPTNANGPDPRRPLSDIDRLKVKKALRGVRVETTHQGKSSKYKITT ITSEPLSQLNFSMDGTTQTVIQYFSQRYKYRLQYTSWPCLQSGNPSNPIYLPMEVCTI VEGQRYSKKLNDKQVTGLLRATCQPPQKREQKIIEMVQHNNYPADKVVSDFRINISNQ MATMPARVLPAPTLRYHDSGKEKTCNPRVGQWNMINKKMVGGAVVQKWTCVNFSRMHI DAVHRLCGELVYTCNAIGMVFNEMPEIEVGSAAPNNIEAALSNIHTRAPQLQLLIVIL PDVNGYYGRIKRVCETELGIVSQCLKPGRKLLSLDRQFLENVSLKINVKAGGRNSVLQ RPLVPGGLENTTIIFGADVTHPASGEDSSASIAAVVASMDWPEITKYKALVSAQPPRQ EIIQDLFTMTEVAQNADAPAQKAEGSKKNFICGGMFRELLMSFYSKNAKRKPQRIIFY RDGVSDGQFLHVLLYEMDAIKKAIASLDPAYRPLVTFVVVQKRHHTRLFPEVHGRQDL TDRSGNVRPGTVVDTNICHPSEFDFYLCSHAGIQGTSRPTHYHVLHDENRFSADQLQM LTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYDEPPAMDGASSVGSGGNQAAAGG QPPAVRRLPQIKENVKDVMFYC" BASE COUNT 766 a 932 c 970 g 746 t ORIGIN 1 gatcaaccct ctctctctct ctctctctgc ctcggcgacc tcgcctccgc ttactctccc 61 acccagacaa aaccctcttt gcctctcatg gcgtcacgcg gcggcgacgg cctcgtcgga 121 ggagggcgcg ggcccctcgg tgggcgggac ggtagagggc gcggcccggc cggtgggcga 181 ggcggcggaa ggggaggcgg ccacccgcag cagcagcagc agcagcagcc gggctacggc 241 cgcggcgacg ggggcggccg tggtcctgcc cctgctgctg gtggtgtcgt tggtcgagga 301 actggaggcg gcggcggcgg cgggcgcggg gacggcggac gcggccgtgg ccgtggcggc 361 ggcggcggag atggcgttcg ccctgctatg gccgcggctc cggcggcgtc gactcctggt 421 ccggttgctg ttgctgctcg gagtactcct cctcctactc ccgcggtcca gatccccgcg 481 gtggcgtcgt cgtcgtcagc gcagccagcg gcggcggcgc agcctcctcc ggcagccgcg 541 gcggtttctg ccctcgcgag ggacgttggg aggcagctgg ctgtcgtggc gggcggcggc 601 cgccccgctc cccccgcggc gccgccggcg cccatcccgg tgtcgagcaa gggcgtcgcg 661 ccaccgtcgc ggccggggtt cgggacggtg ggggagagga tcgtggtgcg cgcgaaccat 721 ttcctcgtcc gcgtctccga caacgacatg atctacctct acgacgtgag tttgagtccc 781 ccaccaaaga ccaggcgcat caacagggta gtgatgtctg agctggccag gttgcaccgt 841 gagtcgcatc tcggtggcat aagcttcgcg tacgacggaa gcaaggccct gtacactgca 901 ggaaaactgc cgttcgactc catggacttc aagatcaagc tgggcaaaga gctcagggaa 961 atcgagtaca aggtgacaat tcgacgtgct ggccaagcag atctgcacca cctgcacgag 1021 ttcatcgccg gccggcagag ggactctcag cagcaaacga tccaagcact ggacgttgta 1081 ctgagggagt caccttctct gaactatgtc atcgtttctc ggtcgttcta ctccactatg 1141 ttcggccgac aagacattgg tgatgggctg gaatgctgga aaggatacta tcagagcctg 1201 cgcccaactc agatgggact ctcattgaac atagacatat cctctacccc attcttcaaa 1261 cctatcagcg tggtagaata tgtcaagaat tgtctgggca cacctactaa tgctaatggc 1321 cctgacccta ggcggcctct ttctgacatt gatcgcctga aggttaagaa agcactacgg 1381 ggagttcgtg ttgaaacaac acaccagggg aagagcagca agtacaagat cactacgatt 1441 acatctgagc cactgagtca gctgaacttt tctatggatg gaactaccca gactgttatt 1501 cagtacttct cgcagcggta caaatacagg ctgcagtaca cgtcttggcc ctgtctgcaa 1561 tccggcaacc cttctaaccc tatatatttg ccaatggagg tatgcaccat tgtagaaggg 1621 caaagatact ccaagaagct caatgacaaa caagtgactg gcctcctgag agcaacatgc 1681 cagcctcccc agaaaaggga gcagaaaatc attgagatgg ttcaacacaa caactacccg 1741 gctgataagg tggtgagtga ttttagaatt aatatttcca atcagatggc cactatgcca 1801 gctcgcgtgc tgcctgcgcc cacgctgaga taccatgact ctggaaagga gaaaacttgt 1861 aatcccagag ttgggcaatg gaatatgatc aataagaaaa tggttggtgg agctgtggtt 1921 caaaagtgga cttgcgtgaa tttttcacgc atgcatattg atgccgtgca cagactatgc 1981 ggcgaactag tttatacatg caatgctatt ggcatggttt tcaatgaaat gccagagata 2041 gaggtggggt cagctgctcc taataacatc gaagctgccc tgagcaacat tcacacaagg 2101 gctcctcaac tccagctgct cattgtgatt ctcccagatg ttaatgggta ttatggaaga 2161 attaagaggg tgtgtgagac tgaacttggg atagtatccc agtgcctcaa gccaggccgc 2221 aagctcttga gcttagacag gcagttcctg gaaaatgtct cactcaaaat caatgtcaag 2281 gctggaggac gcaactcagt tcttcagaga cctcttgtac ccggtgggct tgaaaacaca 2341 acaataattt ttggtgccga tgtcacccat cctgcttctg gagaggactc atcggcgtcg 2401 atcgcagctg tggtggcctc catggactgg cctgagatca ccaagtacaa agccctcgtc 2461 tctgcccagc cacctcggca ggagattata caagatctct tcaccatgac tgaagttgcg 2521 cagaatgctg atgctccagc acagaaggct gaaggttcga agaagaattt catatgcggc 2581 ggaatgttca gggagttgct tatgtcattc tacagtaaga atgctaaacg taagcctcaa 2641 aggataatat tttacaggga tggtgtaagt gatggacaat tccttcatgt tctgctctat 2701 gagatggacg caatcaagaa ggctattgca tctttggacc cagcatacag gcccctggtg 2761 acatttgtgg ttgtccagaa gaggcaccac acaaggctct tccctgaggt gcatggaagg 2821 caagatctga cggacagaag tggaaatgtt cgtccaggaa ccgtggttga cactaacatt 2881 tgccacccta gtgagttcga cttctacctg tgcagccatg ccggaatcca gggaacaagc 2941 agaccaaccc actaccacgt tctccatgac gagaaccgtt ttagtgccga tcagctgcag 3001 atgctcactt acaatttgtg ttacacctac gctcgatgca cccggtctgt ctctgttgtc 3061 cctccagcct actacgctca cctggcagca ttccgggcga ggtactacga tgagcccccc 3121 gccatggacg gagcttcgtc ggtcggcagc ggcggcaacc aggcggcggc cggcggccag 3181 ccaccggcgg tgcgccgcct cccgcagatc aaggagaacg tcaaggacgt gatgttctac 3241 tgctgatcga atcggcgcct agcttgggtt ttaactacaa acattttgtt ggtcgctcgt 3301 cagtattcat tcaggctgtt agtgtactgt gctatctctg aaattgtgat ggtgtcattt 3361 gggacatgtt aacctgttgt tgaacttgtg atctgtgatg ttgatgcagc tgct //