LOCUS AK087890 2206 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
full-length enriched library, clone:E330037I15
product:hypothetical Proline-rich region profile containing
protein, full insert sequence.
ACCESSION AK087890
VERSION AK087890.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2206)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002)
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E330037I15
FEATURES Location/Qualifiers
source 1..2206
/clone="E330037I15"
/db_xref="FANTOM_DB:E330037I15"
/db_xref="MGI:2426764"
/db_xref="taxon:10090"
/dev_stage="2 days pregnant adult"
/mol_type="mRNA"
/note="clone_lib: RIKEN full-length enriched mouse cDNA
library"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="ovary"
CDS 563..949
/codon_start=1
/note="hypothetical Proline-rich region profile
containing protein (PROSITE|PS50099, evidence: InterPro)"
/note="putative"
/protein_id="BAC40036.1"
/transl_table=1
/translation="MIPAMVPAGLERRSLVAPHSLLTSRQSSFGPASPARRRSAGEIT
LRRDSRAWPRPQPPQPPPRARSMTLRPPRPPPAPSWLQHHLRDRGRGEESGGRSELEV
GGTCGSSGNLQPCLLRTPTRSSAALS"
BASE COUNT 517 a 603 c 571 g 515 t
ORIGIN
1 gactcaaggg tcgcggaaca aaatcggaaa actctgcagc aagaacgaac gcgttgcggg
61 actgaaaacg acttccacgg agaactggcc gaagcggaga agtcctgctt aatttcccct
121 aaaacaaatc cgaactgtgc aaacaagcac accctcccgt gcagcggagc ggggacgcca
181 ggtagggggc accgagaaca atcccaaggt taacgtttca ctggcacaca cacaccccag
241 tcctcggcta acggagccgc tcggctccga gccccgggag cttccgagcc ggaccgggtc
301 ccagcccaac cccatccacc cagcacctga gtgacgccgg ggacgtcacc agcctcggcg
361 caggagcggc ccccggcgga ggaggagacc ccggcccgcc gagccccgcc gccctccgcg
421 tgactccaga ggccggtcgg gggcgccagc ggcaccggca gagcccgaac ctgcgacctg
481 gacccgagaa ccggcggcca gcggacggga ccggccccga gcgctcgctg acctggagag
541 gtgcttcagg atctgtttct tgatgatccc agccatggtg cccgccgggc tggagcgccg
601 ctctcttgtc gctcctcaca gcctcctcac ttcgcggcag tcttctttcg gtcccgcctc
661 accggcccgg aggagaagcg ccggagagat cactctcaga agagactcga gggcctggcc
721 gaggccacag ccgccgcagc cgccgccgag agcccgaagc atgacgctca ggccgccgcg
781 gccgccgcca gcgccatctt ggctgcagca tcacctaaga gaccgggggc ggggagagga
841 gtcggggggg cggagcgagc tcgaggtggg cgggacctgt gggagttccg ggaatcttca
901 gccctgccta cttcggactc ccactaggtc ctccgctgcc ctttcctagt tggtacttgg
961 gctttcatct tttcttcatc cctttcatct tgtctgtgcc tctctcgctg acatcctagt
1021 cttgcttctt catttcctcc gaactcaact ttctgctcta caagtagctc tgtttatgtt
1081 attcttttgg ccatttcagc tttttaatct cagtttcttt taccaagatc cttcccttag
1141 actaacggct gtaatttaat gtttccattc gttggtctaa ccttaaagga agtaaaattg
1201 acagcatgtc atatttaacc gaatatacct aaagacctag aagttagaaa gtctagagcc
1261 agtgagatgg ctctcagcca gcaagagtac ttgtcaagca agccttgatg atctgaactt
1321 gatgaccaaa ccaccatgaa ggaaagaact gcccttgaaa gttatcctct ggacacacac
1381 acacatagac acacttagta gaaattttga aatggaatgc ccaaaatgaa gtcctggttc
1441 taatattttc tagctatgtt aacttggaaa gattgttttc agctttagct ttcacttcat
1501 gtatgaatgt gactttggtc acacaagggg acgtcagaga acagccctgg gtgtagtgcc
1561 tcactttctt ctatctcttc ctcaacagct acttgtgtac tccaggttac ctggttccta
1621 ggatcctctt gttggtctct tgttgcctct cccatattgc ctaaagagtg ctgggattac
1681 agacttctgg cttcatgtga attctggaga ctcaagttca agtcctgatg attgaatggc
1741 aagtgtattg tctgctaatc cagctctctc agccgttaac ctcactttta atcatcttta
1801 aaatatagtg tctgccctta gggatggttt ggtaggggcc ctagtaggta ctgttggtgt
1861 gtctgggcca tattgtctgg ccacctgttg tagaagcagg ttttgaaaaa gatataaatc
1921 actaaaatat ttcataaaca ggtgggagag agagacagtg tagccatttg aggtgggaag
1981 aagcagcatt agagttcaca atgcttgaag catgccaggg taacaagaat ctgctaacac
2041 aaatactgtg caaggatgaa agcaatctga gctgtttgaa gggaaccaag ctgggtgtag
2101 tgacacatgg gtctgtaatg tcagcccttc ggggacagag gcaggaggag tgctacaagt
2161 ctgaggtcac catgatctac ttagcaacac cttctcttga aaaaat
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