LOCUS AK087599 2652 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
full-length enriched library, clone:E230022A01
product:hypothetical protein, full insert sequence.
ACCESSION AK087599
VERSION AK087599.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2652)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002)
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E230022A01
FEATURES Location/Qualifiers
source 1..2652
/clone="E230022A01"
/db_xref="FANTOM_DB:E230022A01"
/db_xref="MGI:2426074"
/db_xref="taxon:10090"
/dev_stage="2 days pregnant adult"
/mol_type="mRNA"
/note="clone_lib: RIKEN full-length enriched mouse cDNA
library"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="oviduct"
CDS 1931..2233
/codon_start=1
/note="hypothetical protein (evidence: Longest-ORF)"
/note="putative"
/protein_id="BAC39940.1"
/transl_table=1
/translation="MCVCDYRCDSQRSTFSSQFSISSKFQGLTEVDRLTRQALEPKSS
HQLKSLPSTYLFYPFPAKESSFYLPVLPFSSYFQPWGNLFMLLLLSYFPTHAYLPS"
regulatory 2627..2632
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2652
/note="putative"
BASE COUNT 801 a 515 c 449 g 887 t
ORIGIN
1 taggggaaaa aaaagctttc agcataggat tttttaaatt gcattctttc ttcattgttt
61 caattcatct tctgtctctt ttcctattta ctggtttgtt ttccattgct gtgaatcttt
121 ctaaaattta gaagaaattt ggctctaaac agattcagtc cagggtccat atgtaaatgt
181 cccaatttac cctaatttcc ctgtccacgt ggcttatttc atggaggaat ttagttgatc
241 ggtttgaatc acatgtccat tccttgaagt aatcactcca gcaggtattt acaatatttt
301 gatttttcta cctttcattg gtcacattcc tacaattaaa actgaatgcc attgtgaatt
361 gtttgactta caaataagga tgtacgtgta attgatccag ctcaatacat gcatacacaa
421 atatcaagtg ctcaaaaatt attcaatgta aaaacatatt ctttcaccag atactttcca
481 gccaatatgt ataaaagcaa tttaaataat gaagcctaag agcctaagca agtttttttt
541 ttttttttgt aattttgacc cgatgtgcat gtctagcata atgctaataa tatcttcatt
601 taaccaattt ttccagtttc tgggttttta ggaacatttt tatgggatta aactgacttt
661 aactgaatcc actactcctt gaatggtttc tgggacagat ttgcatatac catgcaagga
721 cagtcattcc catttctagc tgcttaaggt tctgtgtgga acacaccagt gtgggtgatg
781 acattctgct taattactca ccatgccact ggaactttaa gatgaactca aacttaatta
841 ctgaactcct gtgtttatgc tatacatata ccactgagcc ataactttag cctctatgag
901 gccaggctgc taaatctgga aaatatgtct tatggggagt tgttttgttt gtttgttgtt
961 tctgttagag gagtctcttt tcccccctgc atttagaaag aattggataa tcagaagagt
1021 tgctcaacaa agagtaatta tagtccatga gtaaggacag atatgtacat gaacacatga
1081 ggggtggttt tacttttgca acaagagcaa ttggatattt gcaagcacat ttatttctta
1141 ctgtggcata atatctgaat tcaggagaga cgataataca ctaaattcat acttgagcca
1201 tatgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgagagag agagagagag agagagagat
1261 agagagagag agagagagag catgcacaca tgtgtgcaca tacaattgtt catttcaaaa
1321 gtaaagcagg atataggaag tgtgccttta gtgacatggt tagtgggtaa agggtcttgc
1381 caggaaggct aatgatatga gctggatcct ggggacccac acagtaccag ggacagaacc
1441 aagctatata gactgtcctt agacctctgc atacacacac acattcacac acacacacat
1501 acacacacta aataaaatgt aatgattaaa gatatcacac acaattaaaa cacaaaagca
1561 ttaccctaat taacataaac aatcacctag ttttccataa tataatcatt ataattaata
1621 gataactatt tttatgaaat gcccacatat acagagaaat atccctcagg gtaatgaata
1681 tactttgtaa gtgtcagata cattgtctag ttgttctctg atttatatca catactgagg
1741 acttatgctt caatttcttt ccctcgaaat tacaacttag tttactaaag tagttcaata
1801 gcagagccct agtagatgaa acatttgtcc agcttctcaa gtcctattct gaaatgtgta
1861 agaaaaggaa gtttatatct atctaaaata ttttagtgtg cgtgtgtgtg tgtgaggggg
1921 ttgtggtgtg atgtgtgtat gtgactatcg gtgtgactct cagaggtcca cgttcagcag
1981 tcagttctcc atttcctcta agttccaggg attgactgag gttgacaggc tcaccaggca
2041 agcacttgaa cctaagtctt ctcaccagct aaagagtctt ccttctactt acctgttcta
2101 cccttttcca gctaaagagt cttcattcta cttacctgtt ctaccctttt ccagctactt
2161 ccaaccctgg ggtaaccttt ttatgttgct cctcttgtct tattttccta cccatgcgta
2221 tttacctagt taactaatag acacatatat gaacctaatt aattaattat ctaattaatt
2281 aattaatata tacatatatc ctgagacagg accttcccac attcatgtgt aaatgacaaa
2341 ggtcaatgcc agcatgaccc tgaattcaca gtctgttttt tctcttcttc caaaggctgg
2401 gttacaaata tgcatcacta catccagctg ttgcaatttt ttccttttat taaacatggc
2461 tttttttcat acataatata tcctaattag tttcccctcc ctctactctt cacaattcac
2521 cacccaccct ccttcccatg cagatctact cactttctgt ctctcattaa caaacaagta
2581 ggcttctaaa taatttaata aatacaatac tataatatat aacaatatta aagtaacaca
2641 ttggaatagg gc
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