LOCUS AK083862 4115 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN
full-length enriched library, clone:D130027H07
product:unclassifiable, full insert sequence.
ACCESSION AK083862
VERSION AK083862.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 4115)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D130027H07
FEATURES Location/Qualifiers
source 1..4115
/clone="D130027H07"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D130027H07"
/db_xref="MGI:2419529"
/db_xref="taxon:10090"
/dev_stage="12 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="spinal ganglion"
misc_feature 1..4115
/note="putative"
/note="unclassifiable"
BASE COUNT 1211 a 746 c 848 g 1310 t
ORIGIN
1 ttaaaatacc cagaggtcag cttcccaagg gattcctttt gctccacctc tcctaacctg
61 ctttattttt attaagtgga aatcaaagat ttttttatag attttgatag aaactttcac
121 ttataatttc tctgagtttt tctcatttcg tttgctgttt ttttctttct tttttttttt
181 ttttttagca ttttattttt cttatagtgt atcttcagga aaaattattc ctgccagctc
241 aacctccctt tcccttttct tacttgttat tggaaagaaa ttccacagta gctggaacat
301 tctgtttgac tgttcaagac aaatggtggt gttctggtct tagagtttca aggcctaaat
361 aggtttccac tttgcctaga gtttaatatc tcgtaccatc acaggagact caatctgtat
421 tcttcattca catgtggtta tttgaggagt tatgtatttt cctgcctgct caaacacttc
481 agggagcgtg gtggtgtggt ttgtgcttac acagccctgc cctgtctagc aaaatggcta
541 ctggccacag gtgatcattg ttatttaaac tgtgtttggt gtgactgaga atctggatct
601 caatatttat ttgcttttaa ttaatttaat taatataaat gtgataatgc atacttagta
661 atttatttag actaaaagtt taaatgtatt tgggacaaat tggctatgtg aatcattttt
721 aaggcaaatt tttggaaatc aaagtaaaat aaaatatttc tgatgaaaat ttggcttctg
781 atttgtagta tactacaaat gtaaagtaga tattggattt tgaagactca atataaaagt
841 agaatatatc agtgatattt ttatattgtc tatgtgatat ggcagtaata ttaagatatt
901 attttgaaat agaattaaat aaaatatgga tgtaattgtc tctttatttt ttatcttttt
961 ttcaaaaatg actatttgaa atttaaaatc atatgctgca tttctgctga ataatagttt
1021 ttagatttgg ctggctctca gagctatctt ttatgaaagt attatggcaa tgctttatga
1081 aaatataggc ttcaaggtat tctggattta caaagtgaat ccactaaatc taagcctact
1141 ttatataggg ttcttgaaca ctttaacctc ccttctggtc taccaaccag aagtagggaa
1201 aaagaaggtt tatacaaaag ggggttatga acctgtttag aagtagttct ttgggggcaa
1261 ttcagctctt cgttgtccag atataagcag tccaatccaa tagtatatac cacacacaat
1321 cagtagcagc aatctagtcc aatagcaaac accaaactgg aatcagtagc attggatctg
1381 tccagcagaa actgcaaggc tcatctgaat catcatgagt cagcagaagt agcacaaatt
1441 attcagatac cttgggaagt tctttggtgc aagtctcttt ccaaagtcaa gatgagcaaa
1501 aaccagggaa gaccaacaaa gtgttgcaag gcatagcaat gcaagagcat cctttcactg
1561 tctgtagggt tctacttaca ctctttccaa acatcacatg ccatctcaag catctgcttc
1621 agtaaaacat cccctcacat ggctatttca gcaaaacatt ctttcacaag acattttcca
1681 gaaaaacatc atgtgacata actgagtttc caaagaaact agaaatttct acttcagtcc
1741 ctaaaagtga ggagttgaga aatttttctc tctataggat tctgtaggtg attctgaagc
1801 aacgctgagc cccactgact gaggaccact ggtctatatt acattactgt cacagggctg
1861 tgcatactaa gctactaagt tcacatttgt ttctacttaa agtttggagt tagaagagac
1921 agcccagagc tctctaattt tgattcattt attgatatgt ttacctatca tttgtctcaa
1981 gaattttatt cttacaataa tatgaacatt tcttcttatg gcacagtggc acagggacca
2041 taagaaagtt gttgtacatt ggaaatctgc ttggtgtcag attccagaca gttgaccatt
2101 acatttctcc cacagggata cccaacagtg tgagtctgtg agaaagacag gctcacatta
2161 ctggcatcat ctgacattta atggttaata ggtgttgtaa gctccaagtt acatgatcat
2221 ctttattgtt atgttgaaag gccttaacca tactgtggag tagatgaggg cctttaaaga
2281 aataattaag tttaatgagt ctagaatatg tcttcaatct attatgattt tggggaatgg
2341 gggagagaga agagatgttt acattggaat gacacagtaa agaggagact attgaaatag
2401 ttttcataag aaaagaaatc ttgacctaga acacctggcc tccaagacag taggcatttc
2461 tgttttttaa actatcaagc atgtggttat tttgtcatag ctgcccaggc cagcttgcca
2521 taggtcatgt gacaaattgg ttgtagaatt gtactgtctg cctattcaga atgacttcaa
2581 agcccacact ctgaagacgt ttccttcctt tcggatagtg ctatatggtt tttatctagg
2641 tctggaagac actgatgtgg atttgaacca ttgggacata agtcaagaca tacatatttt
2701 accttttctt gagtataagc cctatgagat ctggcctctg gtggattttg catactgttg
2761 catactcttg ctcctcctca ccagcaatga tgttttttca gggtgaaata ggggtatgct
2821 gagtgaatat ctattggatg ggctgaataa acagaaaacg agaggcaact gatggcagat
2881 aggtggtgcc tcagacccca ctctgaggaa tatccacatt cgggtcatgg tatcccaggt
2941 ttgcattgac aaacacagcg actgggagcc taagtactgc ttacagggaa gccagcaggc
3001 atagaaattt gtaaaaatta gttatgcgat gctactggtg attcagaaag gagagcaaag
3061 cagtaggaag cccctagaat cagggagacc ggcctggagg ctgagcagag actgagcagg
3121 gagaccggcc tggaggccga gcagagacgt tagcttggct gtcggagggg aaaggacact
3181 tgaggcgttg cagggagagc aacgcagaga gcactgagga gcagatgact gacaggagag
3241 cgagatgaaa agagttaaag gcaagtcagg agcgctttgc ctaggccatg ctaggcccgc
3301 agaggccgag ttacttgttc aaagccacat gcttctcatc tgaggagtct tttattattt
3361 gtttccatat tgagcgtctg ttctttcaga agcttagaat cttgtgctgg gatttggttt
3421 acacgtctgg actgataaat tttgactgtc agttcagcca aaggaatatt actactcata
3481 cttgacaact tctaaaaaat gtaattaaaa atgaaactgg agacagcaca taaaacaaca
3541 tgtttctaaa gctgacatat tttggtcccc aaagctattt tgaatttgag cgttagaaat
3601 gaatctttaa actttcacga gtgaggttgg gtacaaagag aggcttttcc cagtctgaag
3661 aatgaatttt aaaatctgct gtagaaaaat accacagaga aaaatatagc aagcagctgg
3721 ccctcttacc catttccaag caggagagga atttcagtcg agcagaaaaa cggctttctt
3781 tcataaaaga aaacacagca agaaaaataa tcctcactgt gtagccctgc gcagttattt
3841 tctgtcgagt attagacaga acccgagggc ttagcattgt tttgatactc ttgcaactgg
3901 cagatcgcct gctggaggaa gttggaaacg gactgaccgg ctccaggctt ccaggtggct
3961 gtggtacccc agctctgtgc tgttgttgtc agtcatttaa ttccctcctg aatattgaat
4021 ggtgttttta gttcccggcc catttagggt gtctttctgt ttcctttttc tttttttttt
4081 cttttatccg ttagccacat taagaagaaa aagct
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