LOCUS AK082137 3573 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:C230012M10
product:1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE EPSILON (EC
2.3.1.51) (1-AGP ACYLTRANSFERASE 5) (1-AGPAT 5) (LYSOPHOSPHATIDIC
ACID ACYLTRANSFERASE-EPSILON) (LPAAT-EPSILON)
(1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE 5), full insert
sequence.
ACCESSION AK082137
VERSION AK082137.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3573)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002)
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=C230012M10
FEATURES Location/Qualifiers
source 1..3573
/clone="C230012M10"
/db_xref="FANTOM_DB:C230012M10"
/db_xref="MGI:2415340"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/note="clone_lib: RIKEN full-length enriched mouse cDNA
library"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="cerebellum"
CDS 57..1154
/codon_start=1
/note="1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE
EPSILON (EC 2.3.1.51) (1-AGP ACYLTRANSFERASE 5) (1-AGPAT
5) (LYSOPHOSPHATIDIC ACID ACYLTRANSFERASE-EPSILON)
(LPAAT-EPSILON) (1-ACYLGLYCEROL-3-PHOSPHATE
O-ACYLTRANSFERASE 5) (SWISSPROT|Q9D1E8, evidence: FASTY,
100%ID, 100%length, match=1062)"
/note="putative"
/protein_id="BAC38421.1"
/transl_table=1
/translation="MLLSLVLHTYSMRYLLPSVLLLGSAPTYLLAWTLWRVLSALMPA
RLYQRVDDRLYCVYQNMVLFFFENYTGVQILLYGDLPKNKENVIYLANHQSTVDWIVA
DMLAARQDALGHVRYVLKDKLKWLPLYGFYFAQHGGIYVKRSAKFNDKEMRSKLQSYV
NAGTPMYLVIFPEGTRYNATYTKLLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDSM
KSHLDAIYDVTVVYEGNEKGSGKYSNPPSMTEFLCKQCPKLHIHFDRIDRNEVPEEQE
HMKKWLHERFEIKDRLLIEFYDSPDPERRNKFPGKSVHSRLSVKKTLPSVLILGSLTA
VMLMTESGRKLYMGTWLYGTLLGCLWFVIKA"
BASE COUNT 939 a 716 c 775 g 1143 t
ORIGIN
1 ggtcctggtg gccgcgcggg caacgcaggc ggagtcgcgg ctggcgagcc gagaggatgc
61 tgctgtccct ggtgctccac acgtactcta tgcgctacct gctccccagc gtcctgttgc
121 tgggctcggc gcccacctac ctgctggcct ggacgctgtg gcgggtgctc tccgcgctga
181 tgcccgcccg cctgtaccag cgcgtggacg accggcttta ctgcgtctac cagaacatgg
241 tgctcttctt cttcgagaac tacaccgggg tccagatatt gctatatgga gatttgccaa
301 aaaataaaga aaatgtaata tatctagcga atcatcaaag cacagttgac tggattgttg
361 cggacatgct ggctgccaga caggatgccc taggacatgt gcgctacgta ctgaaagaca
421 agttaaaatg gcttccgctg tatgggttct actttgctca gcatggagga atttatgtaa
481 aacgaagtgc caaatttaat gataaagaaa tgagaagcaa gctgcagagc tatgtgaacg
541 caggaacacc gatgtatctt gtgattttcc cagagggaac aaggtataat gcaacataca
601 caaaactcct ttcagccagt caggcatttg ctgctcagcg gggccttgca gtattaaaac
661 acgtactgac accaagaata aaggccactc acgttgcttt tgattctatg aagagtcatt
721 tagatgcaat ttatgatgtc acagtggttt atgaagggaa tgagaaaggt tcaggaaaat
781 actcaaatcc accatccatg actgagtttc tctgcaaaca gtgcccaaaa cttcatattc
841 actttgatcg tatagacaga aatgaagttc cagaggaaca agaacacatg aaaaagtggc
901 ttcatgagcg ctttgagata aaagataggt tgctcataga gttctatgat tcaccagatc
961 cagaaagaag aaacaaattt cctgggaaaa gtgttcattc cagactaagt gtgaagaaga
1021 ctttaccttc agtgttgatc ttggggagtt tgactgctgt catgctgatg acggagtccg
1081 gaaggaaact gtacatgggc acctggttgt atggaaccct ccttggctgc ctgtggtttg
1141 ttattaaagc atgagcaagt agcaggctgc agtcacagtc tcttattgat ggctacacgt
1201 tgtatcacat tgtttcctga attaaataag gagttttctt gttgttgttt ttttgttttg
1261 ttttgttctg ttttaagcct tgatgattga acactggata aagtagagtt tgtgaccaca
1321 gccaacatgc atttgatttg gggcaaacac atgtggcttt tcaggtgctg gggttgctgg
1381 agacatggaa gctaagtgga gtttatgctg tttttttttt tttaatgttt tcatgaatta
1441 atctccactt gtaaagatta ttggatactt tctgtaattc agaaggttgt attttaacac
1501 tagtttgcag tatgtttcgc tatattggtt atcttccatt tgactacttg gcagctcaga
1561 ctcttaatac taaagtattt tacattttga agctatgtga tactggtttt ttgttgttgt
1621 tgttgttagt ttctgaaagt caatgaaaga cactgtaatg atgcgttaag atgttccaag
1681 aaaaaggtga gaattattca tggcaaaaaa gatctgtcta gtgtatattt ttattatatt
1741 gctctattta gctaattttc tttatatttg caaaataatg aacattttta atatttatta
1801 aaatgcttga tttgcatacc cccgattcta cagagaataa tgtgtaaagt gtcagaatag
1861 acttgaagct ctgctgtgac tcagtctcct ttgtcagagc ttctagtagc ccagctactg
1921 agctgctttg ttagtacctc cagcacctga gccgttaagt acttataaat gcaagggacc
1981 cgttatcttc atatcggaat agacatgaac agagctctaa ggcgatgaaa gtctgccagc
2041 atcctctctg tcctcgcacg tgccttctgc ctggctccat ttgctttggc actgcgttcg
2101 atctagagtg taggtgctca ctgcttattt cagccctggc tctgtggttt tgtgtcctcc
2161 agtggtgctg ttcactgttg gggtgcaggt ggtgctgccc tgactcagag gggcagctcc
2221 ctggctcctg agggtgagcc ttcttggcta ctacagaagt attgtgcgtt tgtttatggc
2281 aagaaccatc aggattggat aaatgtgtta tttctctttg atttccatgg agccacactg
2341 ttggtacatg tcccctgtga acagagctac ctttcaggag cacatcatac tgtcgtgagt
2401 cacggcacgg tgtgtcctgt gagaagaggc tttctaacgt gtgatttgcc gtgtttctat
2461 gttgtgattt aagcgtgatt gcctactagt cattcaaggt aacatttctg caaatttcat
2521 acagattttt gtcacaaaat tactatacca atgatctagt tgaaatagac caattgaatc
2581 acaataaata atttttttta attgagggaa aatttgcttc ttgttttttc aaagccagaa
2641 aacgagccat ttcaaacatc tttgaagagt catgtgctgt cacttgtttt ctatgtgtta
2701 gtgtctatat tcatgtatgg atacacatga acatgtatat tcatacacac acgccaatag
2761 aatataacag cctaaaaaca atccagcttg tgtatcatgt tactgtgctg aattgtaatg
2821 gtttttactt acaaagtgag gctaaaatcg atttcatgtc tttgttaaat acgttttttc
2881 agcaatccta ttagagctta ttttgaccag atcaaaataa gtacaagttc agagacttta
2941 aatatggctg aggtctagag cgatagctca gtagttagga acacatgcca ctctttcaag
3001 ggcttcagtt cccagcactc atatggaggc tcacagaagg gctggaattc cagcttcatg
3061 gaattggaca catcctctag cttccatgga tctgtctgtc tgtctctccc ttctctctct
3121 ctctctctct ctctctctct ctctctctct ctctctcact cactctttaa atatcatgga
3181 tatgctgtgc atttaaattt taagacacag aaccattgga attacatgga ttatagctga
3241 ttctctttga acagggcaca gtgttctgcg taagatctct tgatcattag cactggactc
3301 actctcctca caagtagcct atcaaatgtg gtattagaaa atacattgtg tcaaaatctt
3361 tgaaagatga gaagaatctc ctaaacatgt ttattttgac ttgacatcac tatttcctga
3421 aaattaactg tctatgattc ttttcacata gtgtaagatc ttacttgtat caccatcagc
3481 ttgcagctta ggggctgcag ttgttctcct tcataagact gccatccgtg tgcatgcttt
3541 tatgtttttc agaaaggatg ttgggatgaa agt
//