LOCUS AK081813 3471 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130078P18 product:period homolog (Drosophila), full insert sequence. ACCESSION AK081813 VERSION AK081813.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3471) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=C130078P18 FEATURES Location/Qualifiers source 1..3471 /clone="C130078P18" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:C130078P18" /db_xref="MGI:2414888" /db_xref="taxon:10090" /dev_stage="16 days embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="head" CDS 185..2668 /codon_start=1 /note="period homolog (Drosophila) (MGD|MGI:1098283 GB|NM_011065, evidence: BLASTN, 100%, match=2453)" /note="putative" /protein_id="BAC38339.1" /transl_table=1 /translation="MSGPLEGADGGGDPRPGEPFCPGGVPSPGAPQHRPCPGPSLADD TDANSNGSSGNESNGPESRGASQRSSHSSSSGNGKDSALLETTESSKSTNSQSPSPPS SSIAYSLLSASSEQDNPSTSGCSSEQSARARTQKELMTALRELKLRLPPERRGKGRSG TLATLQYALACVKQVQANQEYYQQWSLEEGEPCAMDMSTYTLEELEHITSEYTLRNQD TFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPSRLP TWGTGTSAGSGLKDFTQEKSVFCRIRGGPDRDPGPRYQPFRLTPYVTKIRVSDGAPAQ PCCLLIAERIHSGYEAPRIPPDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAP VLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDTSWAGFVHPWSR KVAFVLGRHKVRTAPLNEDVFTPPAPSPAPSLDSDIQELSEQIHRLLLQPVHSSSPTG LCGVGPLMSPGPLHSPGSSSDSNGGDAEGPGPPAPVTFQQICKDVHLVKHQGQQLFIE SRAKPPPRPRLLATGTFKAKVLPCQSPNPELEVAPVPDQASLALAPEEPERKETSGCS YQQINCLDSILRYLESCNIPSTTKRKCASSSSYTASSASDDDKQRAGPVPVGAKKDPS SAMLSGEGATPRKEPVVGGTLSPLALANKAESVVSVTSQCSFSSTIVHVGDKKPPESD IIMMEDLPGLAPGPAPSPAPSPTVAPDPTPDAYRPVGLTKAVLSLHTQKEEQAFLNRF RDLGRLRGLDTSSVAPSAPGERGSHLGLP" BASE COUNT 707 a 1081 c 926 g 757 t ORIGIN 1 gggaggagcc ccaggagtga agaaatttgg agtctacgtg cgctcggaac tgtgtcgtga 61 ttaaattagt cagccctcag agacaggcgt cctacctcct ttatccagac ctcaaaagcc 121 ccgttgtgca cccgtggtgg cttcttcacc ttccctgttt cgtcctccac tgtatggccc 181 agacatgagt ggtcccctag aaggggccga tgggggagga gaccccaggc ccggagaacc 241 tttttgtcct ggaggagtcc catcccctgg ggccccgcag caccggcctt gtccaggccc 301 cagcctggct gatgacactg atgcaaacag caatggctca agtggcaatg agtccaacgg 361 acccgagtcc aggggcgcat ctcagcggag ttctcatagt tcctcttctg gcaatggcaa 421 ggactcagct ctgctggaga ccactgagag cagcaagagt acaaactcac agagcccatc 481 cccacccagc agctccattg cctacagcct cctgagtgcg agctcagagc aggacaaccc 541 atctaccagt ggctgcagca gtgaacagtc agctcgagcc aggacccaga aagaactcat 601 gactgcactt cgggagctca aacttcgact gccaccagag cgtcggggca agggccgctc 661 tgggaccttg gccacactgc agtacgctct ggcctgtgtc aagcaggttc aggctaacca 721 ggaatattac cagcagtgga gtctggagga gggtgagcct tgtgccatgg acatgtctac 781 ttacaccctg gaggaattgg agcatatcac atccgaatac acacttcgaa accaggacac 841 cttctctgtg gctgtgtcct tcctgacagg ccggattgtc tatatttcgg agcaggcagg 901 tgtcctgctg cgttgcaaac gggatgtgtt tcggggtgcc cgcttctcag agctcctggc 961 tccccaggat gtgggtgtct tctatggctc tactacacca tctcgactgc ccacctgggg 1021 cactggcacc tctgcaggtt caggtctcaa ggacttcacc caggaaaagt ctgtcttctg 1081 ccgaatcaga ggaggtcctg accgggatcc agggcctcgg taccagccat tccgcctaac 1141 cccatatgtg accaagattc gggtctcaga tggagcccct gcacagccgt gctgcctact 1201 cattgccgag cgcatccact ctggttatga agctccccgg atccctcctg acaagaggat 1261 cttcaccacc cgacacacac caagctgcct cttccaggat gtagatgaaa gggctgcccc 1321 actgctgggt taccttcccc aggatctcct gggggctcca gtacttctct ttctacatcc 1381 tgaggaccga cccctcatgc tggccattca taagaagata ctgcagctgg caggccagcc 1441 ctttgaccat tcccctattc gcttctgtgc tcggaacggg gaatatgtca ccatggacac 1501 cagctgggcc ggttttgtgc acccctggag ccgcaaggtg gctttcgtgt tgggtcgcca 1561 taaagtgcgc acggcacccc tgaatgagga cgtcttcact cccccagccc ccagcccagc 1621 tccgtccctg gactctgata tccaggagct ctcagagcag atccatcgat tgctgctgca 1681 gcctgtgcac agctccagcc ccacggggct ctgtggagtt ggccctctga tgtcccctgg 1741 tcctctacac agccctggct cctccagtga tagcaatggg ggggacgctg aggggcctgg 1801 gcctcctgct ccagtgactt tccagcagat ctgtaaggat gtgcatctgg taaagcacca 1861 gggacaacag ctcttcattg aatctcgggc caagccccca ccccggcccc gcctccttgc 1921 tacaggtaca ttcaaagcca aagtccttcc ctgccagtcc ccaaaccccg aactggaggt 1981 ggccccagtt cctgaccaag cctcgttagc cttggcccct gaggagccag agaggaaaga 2041 aacctctggc tgttcctacc agcagatcaa ctgcctggac agcatcctca ggtatttgga 2101 gagctgcaac attcccagta caaccaagcg taaatgtgcc tcctcctcct cctacactgc 2161 ctcttcagcc tctgatgatg acaagcagag ggcaggtcca gttcctgtgg gggccaagaa 2221 agatccgtcg tcagcaatgc tgtctgggga gggggcaact cctcggaagg agccagtggt 2281 gggaggcacc ctgagcccgc tcgccctggc caataaggca gagagcgtgg tgtccgtcac 2341 cagtcagtgt agcttcagct ccaccatcgt ccatgtggga gacaagaagc ccccggagtc 2401 ggacatcatc atgatggaag acctgcctgg cctggcccct ggcccagccc ccagtccggc 2461 ccccagcccc acagtagccc ctgacccaac cccagatgct tatcgcccag tgggtctgac 2521 caaggccgtg ctgtccctgc acacacagaa ggaagagcaa gccttcctca accgcttcag 2581 agatcttggc aggcttcgtg gacttgacac ctcttctgtg gccccctcag cccctggtga 2641 gcgagggagc cacctggggc ttccttgagc tgtcttgtgt gcagtcagct gctgggggta 2701 taaagtgatg gtgagagaag atgtatctgc tctggggccc aggtgatgct gtcttcatca 2761 tcaggaccgt gtttagttag atttctagat agcatctccc tattaggcca gggctccagg 2821 ctgcaggctg aggagggaag cctgggggct ggcactgaga caagcaggca gaagtgcctg 2881 gtttcaggta agctactcca gtcctagcct gggaacaagg aaaaattgtg cccacatagg 2941 acatagcatc actgactctg ggccaatctt ggctggggtt ggacttcaag ggcagatgga 3001 aaacagctcc tctaggtacc tgcaggagac ctttgcagac ggctgtggac tgaggcctgg 3061 gctgttctgg ccactgcatc gtcccattgt gagttaggca gagcacagtt tcaactggca 3121 ggacaagtat ccaggctggc atggcctgag ggattttggc agatgaactg aagtcacctg 3181 cctattcatc catggacccc tctacctctc ctctgccagt gtgcctctgt tttgcacacc 3241 ccagcttaac catcatgtaa ctgtgccctt ctctggctcc tttcacaata aacccccttg 3301 tcccctggct cctgtgattc ttccccgccc tttccctact tcctgtcttc tgtatttcac 3361 atgcagggtg agcagctttc tctgcctggc cctttccctg tcctcttagt gtttcagggc 3421 agtagaggtg gccggctcct tgttaaccct ggtctttccc cacaggctgc c //