LOCUS AK078557 2225 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820450N01 product:CYTOCHROME P450 CYP4F16, full insert sequence. ACCESSION AK078557 VERSION AK078557.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2225) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=6820450N01 FEATURES Location/Qualifiers source 1..2225 /clone="6820450N01" /db_xref="FANTOM_DB:6820450N01" /db_xref="MGI:2396780" /db_xref="taxon:10090" /dev_stage="12 days embryo" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /sex="female" /strain="C57BL/6J" /tissue_type="mullerian duct includes surrounding region" CDS 90..1664 /codon_start=1 /note="CYTOCHROME P450 CYP4F16 (SPTR|Q99N17, evidence: FASTY, 100%ID, 100%length, match=1572)" /note="putative" /protein_id="BAC37334.1" /transl_table=1 /translation="MLRLSVSGLDLGSVVTSSWHLLLLGVASWILARILAWTYSFYEN CSRLSCFPQPPKKNWFSGHLGMIQSNEEGMQLVTEMGQTFQDVHLFWLGPVIPVLRIV DPAFVAPLLQAPALVAPKDMTFLRFLKPWLGDGLFLSSGDKWSRHRRLLTPAFHFDIL KPYVKIFNQSVNIMHAKWKHLSSEGSARLEMFEHISLMTLDSLQKCLFGFDSNCQESP SEYISAILELSSLIIKRSLQLFLFVDFLYYHTADGRRFRKACDLVHNFTDAVIRERRH TLSSQNHDEFLKSKTKSKTLDFIDVLLLAKDEHGKELSDEDIRAEADTFMFGGHDTTA SALSWILYNLARHPEYQERCRQEVQELLRDREPEEIEWDDLAQLPFLTMCIKESLRLH SPVIDLLRRCTRDIVLPDGRVIPKGNICVISIFGIHHNPSVWPDPEVYDPFRFDPENP QKRSPLAFIPFSAGPRNCIGQTFAMSEMKVALALTLLRFRILPDDKEPRRKPEIILRA EGGLWLRVEPLSKGAQ" regulatory 2204..2209 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 2225 /note="putative" BASE COUNT 495 a 594 c 588 g 548 t ORIGIN 1 gagcttcctg aagttaggaa gcaggggata aatgcttttc acaggactgg ggagaaggtc 61 ttagaggacc agcagctcct gagataagga tgctgcggct aagtgtgtct gggctggacc 121 tgggctctgt ggtgacctcg tcatggcatc ttctgctgct tggagtggct tcctggattt 181 tggccagaat ccttgcctgg acttactcat tctatgagaa ctgctcccgc ctcagttgtt 241 tccctcagcc tcctaaaaaa aactggtttt caggtcactt gggcatgatc cagagcaatg 301 aggaaggcat gcagctggtt accgaaatgg gccagacttt ccaagatgtc catctctttt 361 ggctgggacc agtgatccct gtgctgagga ttgttgaccc tgcatttgtt gcccccctgc 421 tccaggcccc agctttggtg gccccaaagg acatgacatt tttacgcttc ctgaagccct 481 ggctggggga tgggctcttc ctgagttcag gtgacaagtg gagccgccat cgtcgactgc 541 tgacacctgc cttccacttt gatatcctga agccctatgt gaagattttt aaccagagtg 601 tgaacatcat gcacgccaag tggaagcacc tatcctcgga aggcagtgca cgtctggaaa 661 tgtttgagca catcagcctc atgaccttgg acagtctgca gaaatgcctc tttggctttg 721 acagcaactg tcaggagtct cccagtgaat acatttctgc catcttggaa ctcagttccc 781 tcataataaa aaggtcactt cagctcttct tgttcgttga cttcctgtat taccacactg 841 ctgatgggcg gcgcttccgc aaggcctgtg acctggtgca caacttcaca gatgctgtca 901 ttagggagag acggcacact ctctccagcc aaaaccatga tgagttcttg aagtccaaga 961 ctaagtctaa gactctggat ttcattgatg ttctcttgtt ggccaaggat gaacatggaa 1021 aggagctgtc agatgaggac atccgggcag aggctgacac ctttatgttt ggaggccatg 1081 acaccacagc cagtgcactc tcctggatcc tgtacaacct ggcgaggcac cccgaatacc 1141 aggagcgctg ccggcaggag gttcaggagc tgctgaggga ccgagagcct gaggagattg 1201 aatgggacga cctggcccag ctacccttcc tgaccatgtg catcaaggag agtctgcggc 1261 tacattcccc agtcatagac ctcctccgcc gctgcacccg ggacattgtg ctacctgatg 1321 gccgggtcat ccctaaaggg aacatctgtg tcatcagcat ctttggtatt catcacaatc 1381 catcagtctg gccagaccct gaggtctatg accccttccg ctttgaccca gaaaacccac 1441 agaagaggtc ccctctggct tttattccct tttctgccgg gcccaggaac tgcataggac 1501 agactttcgc catgagcgag atgaaggtgg cactggcgct gactctgctg cgcttccgca 1561 tcctgcctga tgacaaggag ccgcgccgga agccagagat aatcctgcgg gcggagggcg 1621 ggttgtggct gcgggtggag cctctgagca agggcgctca gtgaccaggt ctactactgt 1681 ctcagtcact ttcctttgcc aatcccagaa taagcggagt ttcacccaga gccatcagag 1741 ggcgctgcag gataacagag actgtctgga agcctggctg agaaaagtct ggggctgctt 1801 tctgagtcca agggcctttc tgggtagccc acagggcctg cagactgatg aagagttgca 1861 tgcaccccag ctcaagaacg gcctttattc ttttagcgat agggaggcac catagatgtt 1921 tgagcaggag agttacaagg tttactggca tgtaacctcc cacaagtctg aagcaggctg 1981 agccagacct tgactttgct gacactaagg agattaccta gggtgtagcc ttcctcccta 2041 gattactcta gtgttcagcc attttccctg ttcctcttca agatactgct acggtgctga 2101 gaggccccag agctattcag gagactatgc ctgcagctgg ctccaggctc caaattgaat 2161 tggtgggaat gggcttcccc tcctttttat aagcgcattc tccattaaac atttgaacct 2221 tggac //