LOCUS AK063976 2126 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-124-C02, full insert sequence. ACCESSION AK063976 VERSION AK063976.1 KEYWORDS oligo-capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2126) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (05-DEC-2001) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2126 /clone="001-124-C02" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2126 /db_xref="Osa1:LOC_Os01g45550" /db_xref="RAP-DB:Os01g0643300" /note="(RAP Annotation release2) Similar to Auxin efflux carrier protein" /note="(Rice Genome Annotation Project) auxin efflux carrier component 3a, putative, expressed" /note="mapping to R01-TIGRv4S1-001081F (Chr.1: short arm=26190808, long arm=26195114, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 389 a 703 c 621 g 413 t ORIGIN 1 aagaagccac tccactcggc cgctcctgca tgtataacta gctagttcta gctcgctcag 61 gcactcgatc caccgccggg cgcgttggat tgagataggc tgaggagatg atatccgggc 121 acgacttcta cacggtgatg gcggcggtgg tgccgctgta cgtggcgatg ttcctggcgt 181 acgggtcggt gcggtggtgg ggcatcttca cgccggacca gtgctccggc atcaaccgct 241 tcgtcgccat cttcgccgtg ccgctcctgt ccttccactt catctccacc aacgacccgt 301 acgccatgaa cctccgcttc ctggcggcgg acacgctgca gaagctgctc gtcctggcgg 361 ggctcgccgc gtggtcgcgc ctcccctcgc ggaccggcgc gccgcggctg gactggtcca 421 tcacgctctt ctccctctcc acgctgccca acacgctcgt catggggatc ccgctgctga 481 tcgccatgta cgggccatac tccggctcgc tcatggtcca gatcgtcgtg ctccagtgca 541 tcatctggta cacgctgatg ctcttcctct tcgagttccg cgccgcgcgg atgctgatcg 601 ccgaccagtt cccggacacg gcggcgtcca tcgtgtccct gcacgtcgac ccggacgtgg 661 tgtcgctgga gggcggccac gcggagacgg aggccgaggt ggcggcggac gggcggctgc 721 acgtcaccgt gcgccggtcc tcggtgtcgc ggcggtcgct gctggtcacg ccgcggccgt 781 cgaacctgac gggagcggag atctactcgc ttagctcgtc gcggaaccca accccgcggg 841 gctccaactt caaccacgcc gacttcttcg ccatggtcgg cggcgggcca ccgcccccga 901 cgcccgctgc ggtgcgcggc tcgagcttcg gcgcctccga gctctactcg ctgcaatcgt 961 cgcggggccc aaccccgagg cagtccaact tcgacgagca ctcggcacgg ccgccgaaac 1021 caccggcaac gaccacgggg gcactcaacc acgatgccaa ggagctccac atgttcgtgt 1081 ggagctcgag cgcgtctccc gtctcagaag tcagcggcct gcctgtgttc agtggcggcg 1141 gcggcggcgc tctcgacgtc ggcgccaagg aaatccacat ggtcatcccc gccgacctgc 1201 cgcagaacaa cggctcaggc aaagagcacg aggagtacgg cgcagtggca ttgggtggcg 1261 gcggcggcgg agagaacttc agctcgacgg cggagctgca cccgaaggtc gtcgacgtcg 1321 acggaccgaa cgccggcggc ggcgccgcgg gcgcggggca gtaccaaatg ccgccggcga 1381 gcgtgatgac acgcctcatc ctcataatgg tgtggcgcaa gctcatccgc aaccccaaca 1441 cttactccag cctcctcggc ctcgcctggt ccctcgtcgc cttccggtgg cacgtctcca 1501 tgccagcaat cgtcgagaag tccatctcca ttctctcgga cgcaggcctg gggatggcca 1561 tgtttagcct gggattgttc atggcgctgc agcccagcat catcgcgtgt ggcaaatcag 1621 ccgccgtcgt ctccatggcc gtccgcttcc tcgcgggccc tgccgtcatg gccgccgcgt 1681 caatcgccat cggactccgc gggacgctcc tgcacgtcgc cattgttcag gcggctctac 1741 cacaagggat tgtgcctttt gtttttgcaa aagaatacaa tgtccacccg gccatcctga 1801 gcacagcggt aatttttggc atgctaatag ctcttccaat cacattgctg tactacatcc 1861 ttcttggact atgatcaaga aagcttatgg acgctctcac ataaaacgga agaaatgggg 1921 gcaaagagag agaaaaaaaa gcgatcctgt ccatctcaaa cagcgtatgc ttatatgtat 1981 agcctgttgt cggacattgc ccatgatgac aagacaacga agttgttaca gagctatata 2041 tctctgcgac atttgtacaa gagataacga cagaatgtac tcaaatataa ccgatattag 2101 atatgtgttc tgttaaagat ctcaac //