LOCUS AK051878 1846 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230014J15 product:similar to BRCA1-BINDING HELICASE-LIKE PROTEIN BACH1 [Homo sapiens], full insert sequence. ACCESSION AK051878 VERSION AK051878.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1846) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=D230014J15 FEATURES Location/Qualifiers source 1..1846 /clone="D230014J15" /db_xref="FANTOM_DB:D230014J15" /db_xref="MGI:2420519" /db_xref="taxon:10090" /dev_stage="12 days embryo" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="eyeball" CDS 117..>1846 /codon_start=1 /note="putative" /note="similar to BRCA1-BINDING HELICASE-LIKE PROTEIN BACH1 [Homo sapiens] (SPTR|Q9BX63, evidence: FASTY, 78.2%ID, 45.8%length, match=1728)" /protein_id="BAC34798.2" /transl_table=1 /translation="MSSVLSDYTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQHCLL ESPTGSGKSLALLCSALAWQQSLSEKPVDEGLNKKPEAPPSCSCACHSKNFTYSDTNL DTSPHFNSPSKPSSGRNGVSTPCQDSPEKNTLAAKLSAKKQASIHRDEDDDFQVEKKR IRPLETTQQIRKRHCLEKDVHHVDARLASEKRVKPESPIGKSFSDRKDSFQNVDGLCS RCCCSAKQGNNQEPANTVKKDHGGQCKRPKIYFGTRTHKQIAQITRELRKTAYSGVPM TILSSRDHSCVHPEVVGNFNRKEKCMELLDGKHGKSCYFYHGVHKISNQQTLQHLQGM SRAWDIEELVSLGRKLKACPYYTARELIEDADIVFCPYNYLLDSQIRETMDIKLKGQV VILDEAHNIEDCARESASYSVTEVQLRFARDELDSLINGNIRKKSHEPLRDVCYNLIN WLETNSKHLVERGYESSCKIWSGNEMLLNLYRMGITTATFPVLQRHLSAVLQKEEKVT PIHGKEEAIQIPIISASTQVVLKGLFMVLDYLFRENSRFADDYKVAIQQTYSWTNQIA IFDKTGVLAVP" BASE COUNT 572 a 385 c 440 g 449 t ORIGIN 1 ggaattcatc tgtgtggcgc tgcggagtgc agcctggaga gggaggagtg gctgtacctt 61 ggtacctggc agcgtcggaa cagccgtgaa gcacctaaag tagagaagaa ggcagaatgt 121 cctcagtgtt gtctgactac accatcggtg gggtgaagat ccactttccc tgtagagcgt 181 atccagcaca gcttgcgatg atgaattcta ttgtcagagg actaaacagc agccaacact 241 gtttgctgga gagtcccaca ggaagtggaa aaagtttagc cttactttgt tctgcattag 301 catggcagca atctcttagt gagaagccag tggatgaggg cctgaataaa aagcctgagg 361 caccaccttc atgttcttgt gcatgccatt caaagaattt tacctacagc gacacaaacc 421 tggacacttc acctcatttc aatagtccaa gcaaaccatc ttctggaaga aatggagtct 481 caactccctg tcaagactct cctgaaaaaa atactctggc tgcaaagtta tctgccaaga 541 aacaggcatc tatacacaga gacgaagatg atgattttca ggtagagaag aaaagaatcc 601 gacccttaga aactacacag cagataagaa aacgtcattg tttggaaaag gacgtccacc 661 atgtagatgc acgactagct tcggaaaaga gagtaaagcc tgagtctccg ataggaaagt 721 ctttctccga caggaaagac tcttttcaaa atgtggatgg cctttgttcc aggtgctgct 781 gttctgctaa acaaggaaac aaccaagagc ctgcaaatac tgttaagaaa gatcacgggg 841 gtcaatgcaa gagacctaaa atttattttg ggacgcggac acacaagcag attgctcaga 901 ttaccaggga gctccgtaag acagcttact caggggtccc gatgactatt ctttccagca 961 gggaccacag ctgtgtccat cctgaagtgg tggggaattt caacagaaag gagaagtgca 1021 tggagctgct ggatggcaag cacgggaagt cctgctattt ctatcatggt gttcataaaa 1081 ttagtaatca gcagacactg cagcaccttc agggcatgtc cagagcctgg gacatagaag 1141 aactagtcag cctcgggagg aaactgaaag cttgtcccta ctatacagct cgagaactga 1201 tagaggatgc tgacatagtg ttttgtccct acaactacct tttagactca caaataaggg 1261 aaactatgga tataaagctg aaaggacaag ttgtcatttt agatgaagct cacaacattg 1321 aagactgtgc tcgggaatca gcaagctaca gtgtaaccga agttcagctt aggtttgctc 1381 gggatgagct agatagtttg atcaacggta acataaggaa gaaaagccac gagcccctac 1441 gagatgtgtg ctataacctc atcaattggt tagaaacaaa ttctaagcat cttgtagaaa 1501 ggggttatga gtcgtcttgt aaaatatgga gtggaaatga gatgctctta aacttataca 1561 ggatgggcat caccacggct acttttccag ttttgcagag gcatctctca gctgttcttc 1621 aaaaagaaga gaaagtcaca ccaatccatg gtaaagagga ggcaatacaa atccctatta 1681 tcagtgcatc aactcaagtc gtgctcaaag gactctttat ggtgcttgac tatctcttta 1741 gagaaaatag cagatttgca gatgattata aagttgctat tcaacagact tactcctgga 1801 caaatcagat tgctattttt gataaaactg gagtcttggc tgtacc //