LOCUS AK046028 1910 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male corpora quadrigemina cDNA, RIKEN
full-length enriched library, clone:B230334L07
product:unclassifiable, full insert sequence.
ACCESSION AK046028
VERSION AK046028.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1910)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001)
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B230334L07
FEATURES Location/Qualifiers
source 1..1910
/clone="B230334L07"
/db_xref="FANTOM_DB:B230334L07"
/db_xref="MGI:2411413"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/note="clone_lib: RIKEN full-length enriched mouse cDNA
library"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="corpora quadrigemina"
misc_feature 1..1910
/note="putative"
/note="unclassifiable"
BASE COUNT 614 a 334 c 403 g 559 t
ORIGIN
1 tttttttttt ttttaatttt tcgagacagg gtttttctgt atagccctgg aactcacttt
61 gtagaccagg ctggcctcga actcagaagt ctgcctgcct ctgcctcccg agtgcaaagg
121 cgtgcgccac cacgcccggc tctactttta acaagggttc ttaaatgctt taacatccct
181 tctagcctac cacccaccag aggtagtgga aaagaaagat tattaggata tgggggaact
241 gtacctgttt agaaatagtt ctttgaagca aatccaatct gcattgttag gatatcagca
301 gtggcagctt gatccagaag aagccatgag actctgttat atgttgttta gaagtagata
361 cttggggcca attttaatct caaattttta ggatagcaaa caagaatcag cagtggtggt
421 atgcaccagc caggcctccg ctgaatctga aacagtcacc aggagtgacc agaaatagct
481 gggatgacag gagaagttca gagaagatga aaacttgaga caaatgaagc attacaaagc
541 tagctatgca agccagaggc tactgtccat tgagtcctat ttataagccc tcaaaacatc
601 atgtgtcctt ccatgggtct tgctttagta atacacccca tgagtctgtt ctcacacgat
661 ggtttacaac catctaactt cagttccagg ggaaccaaca ctctcttctg gtttccactt
721 tcaccacaca catatggtat gcagatgtat atacaggcaa aatacccata cacttaaaaa
781 aaacattata gtacacttct tcttaataac aacactgaat gtttggtggg gaccaggagg
841 cagaaacaaa cagacatctg agtttgaggt tagcctggtc tacatagcaa gtttgaggac
901 attcaagatc atgattagca aacaaataaa atcattataa aggctggaaa atcactctgt
961 gactatagca atctagtaat caaaagacta cttgaaacat ttcaaattta tttttctttt
1021 tattacagat acctgcatta caacaataaa gattgttgcc taagataaat ttccaaagat
1081 tgttatttaa gacaaatttc cttttatata gacagaagag aacattttat taacatttat
1141 ttctgcttaa ttctccaaac aggataggta aatggtgaga agtatattat aattactgct
1201 cacttatagt gaaaatttca tttccctggc attaatttgt ataggtaagg ttacaagtat
1261 ttccaattat ataggagaaa ttagtgtggt caaaattgcc agagtagggc tggagagatg
1321 gtgagcaggt taagaatgca ttctgctcgg agagagaaca caagttcagt ttctaatgcc
1381 tatgttgggt acacatactc gaaattaaaa ataaaaatat aaattatatt taaaaatatg
1441 tcttgtgcag gaaaccacag ctgctgtggt tgtatgcaga tgccctatta tcttcagaac
1501 tccagaagac actgtttctt gctagccaac attatagcat tgtggtggga gtaggatggg
1561 gctggggctt gttttgaacc tccaccccat ctgaggaagc atgggcagtt gatggcttct
1621 ggagagttgg gatcttttaa gggtatgacc ctggtaggta aaccaccata tggttggata
1681 gaccccacct tgggagtata tgggcagtac aagttggact aaatagatta ttgatgaaaa
1741 gataacagga agttgaggga gtagggagat agaggtaggt ctgggaggag gaggggtgaa
1801 aggatgaata taatcaaaat atattgtgtg aaattctcaa aaactaaaag tatttaaaaa
1861 tattgaattc atttaaaaag gtatcagtat attcaagttg tttttacttt
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