LOCUS AK043424 3234 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730094K14 product:SH3 domain protein 2A, full insert sequence. ACCESSION AK043424 VERSION AK043424.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3234) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A730094K14 FEATURES Location/Qualifiers source 1..3234 /clone="A730094K14" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A730094K14" /db_xref="MGI:2408618" /db_xref="taxon:10090" /dev_stage="7 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="cerebellum" CDS 110..847 /codon_start=1 /note="SH3 domain protein 2A (MGD|MGI:700009 GB|NM_019535, evidence: BLASTN, 99%, match=813)" /note="putative" /protein_id="BAC31546.1" /transl_table=1 /translation="MSVAGLKKQFHKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTS RAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGR ELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKK LEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSAL VQAQLEYHKQAVQILQQVTVRLEERVP" BASE COUNT 965 a 713 c 675 g 881 t ORIGIN 1 ggcgccagca gctcccgcgg tcgcacgacc agcggcggcc cggcgacccc agccgcctct 61 ccgcatctgc atctgcatct gccggccgcg cagcctcccg catcccatca tgtcggtggc 121 agggctgaag aagcagttcc acaaagccac tcagaaagtg agtgagaagg tgggaggagc 181 ggaaggcacc aagctcgatg atgacttcaa agagatggag aggaaagtgg atgtcaccag 241 cagggctgtg atggagataa tgacaaaaac gattgaatac ctccaaccca atccagcttc 301 cagggctaag ctcagtatga tcaacaccat gtcgaaaatc cgcggccaag agaaggggcc 361 aggctaccct caggcggaag cactgctggc agaggccatg ctcaagttcg gcagggagct 421 gggtgatgat tgcaactttg gtcctgctct cggtgaggtg ggagaagcca tgagggagct 481 ctcggaggtc aaggactcat tggacatgga agtgaagcag aatttcatcg acccccttca 541 gaatcttcat gacaaggatc tgagggagat tcagcatcat ctgaaaaagc tggaaggccg 601 acgcttagac tttgattata agaagaagcg acaaggcaag attccagatg aagaactccg 661 ccaagctctg gagaaattcg atgagtctaa agaaatcgcc gagtcgagca tgttcaacct 721 cttggagatg gatatagaac aggtgagcca gctctccgca cttgttcagg ctcagctgga 781 gtaccacaag caggcagtgc agatcctgca gcaggtcact gtcagactgg aagaaagagt 841 tccctgatgg aaataatagt gtcctccact ttctgcttcc ctatcgagaa agagagagct 901 cctcatggct ttgcatcctc tttttggttc tctagtgaga cacctaccaa cgactgtgca 961 tcagtactgg actcatgtct attaatttgg gcatgagcaa cctcaaatgt cacctctttt 1021 agcccagacc cccttaagtc ttcctaggtg gttggcttgt tgaatctcta gcaatactaa 1081 tttagtatgt gctcaagatt tctaaccttt tagaagtgtt tgcattctaa ttaatgaagg 1141 tggcaacaca ccaatctatg ttcacaaatc ttcatacctc ggttgagtta ggaaaagctt 1201 atttctgcgc aacagggcag aatatgaggt tggttctcga tgcctcatta attggatcct 1261 ttctagaggt cctatgtcct tttgggatct tcattgtcta tttagatgat aaaatgtcat 1321 ataatcctta gacacctgtt tgtagctcat ggctaatttg gctaaaactg cttagtcctt 1381 taaggtaaag tcacagagct ctacttaagg gcaatcacag gaactaccac gtggtaggac 1441 tttctgcttg ttcatgcaaa tcacctcctt tgtaaaatac acctctttct gtggaatgtc 1501 aaatgagtat aagacagttg tgaaaatgtt gcaaagctat gtagaattag cgaaacaaga 1561 gttatcactt agacatttct ttttagagat ttacattttt gatttgaata aaatttaggg 1621 gagtccctct aactgattcc aagctatcag aactagaatg atttcttggt ctagctgtct 1681 ctctctctgt ttctgtctct gcctctgtct ctgtctgtct ctgtctccgt ctcagtcttt 1741 cacatgagca catgctcaca cgcgtacaca cacacacaca cacacacaca cacacacaca 1801 cactcactca cacacacaca cctaaaagtc catgtattga atgagaactc agaattataa 1861 ctgctggtga aattattctt tgtaagagaa atacatcatc ttcaaataga acatgcagaa 1921 atagcatcta aagatttagt aaagaaagaa aacaaatggc acacaattaa aatagacata 1981 ttctccagga atttagtcct taggcatcac aatatgactt cacttttggt tttgtctagc 2041 ctaccttata taccacgaat ctgaagtatt tttggatgat gcagtttttt attttcattt 2101 tttaatttta tgatacaaaa tggccaaaga tcactgggag tcatatgatt taagccttgc 2161 tacgagatgc agtatccatg gataccattg atatgtccta actcagcctc tcactgtggc 2221 cattatgacc atcattttat atgtctgtct attactgaca gtgttaacca tactcatcac 2281 caggtatacc acctacttat gctataggtc caagggaaaa tcctggtttc ttcacacgaa 2341 tatgactatt aatcaaagca gtggattggg gatgtttcaa agtggcagat ttggctagta 2401 cccatttctg ggcctctggg gatcacagag tagtcactta tccatacatt ccaaagccaa 2461 accagaacca ttcctgccag catttcaatt aattaggaaa tcaagaagcc ccaatctctc 2521 agaaagatca gtttgcaaaa gctttttttt ttcattctaa atcaatgtct gattttggaa 2581 gcactacaga cattggcaat cataagtttt caacctaata gcaatttgat attaaaactt 2641 ctgtagttag tattatgcat gcaagattac caagtgggac tacagacacg acagaaaata 2701 gagaagtcag ctatatgaag tagtatggct gggggaaaaa tcatgttcag caagcctgac 2761 ttgggttgca gcccagtttc cactagcttt cctctccatc tgacttggaa cgacatacca 2821 ccaagctttc atgtggcacg ttggagaggt tgggtcgata ataaacacat cagcaaggtg 2881 cagagcatgt gttagtttca cttctctcta acaaggaatc ctgacagaga agacattaca 2941 taacattcac cgatttctga tggtgagccc acagttgcaa acatatgatt tcaaaaaaag 3001 agagaactgc ctgctataag attgctattt ctttggatac agaaaatgtg gtacatgtac 3061 actatggagt actactcagc tattaaaaac aataaattta tggatggacc tggagaatat 3121 catcctgagt gaggtaaccc aataacaaaa gcactcacat gatatgcact cactgataag 3181 tggctattag cccagaaact tagaatatct aacatataat ttgcaaaaca catg //