LOCUS AK042697 3524 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730016J17 product:NUCLEOLAR PROTEIN ANKT (UNKNOWN) (PROTEIN FOR MGC:8102) homolog [Mus musculus], full insert sequence. ACCESSION AK042697 VERSION AK042697.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3524) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A730016J17 FEATURES Location/Qualifiers source 1..3524 /clone="A730016J17" /db_xref="FANTOM_DB:A730016J17" /db_xref="MGI:2407786" /db_xref="taxon:10090" /dev_stage="7 days neonate" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="cerebellum" CDS 87..1271 /codon_start=1 /note="NUCLEOLAR PROTEIN ANKT (UNKNOWN) (PROTEIN FOR MGC:8102) homolog [Mus musculus] (SPTR|Q9ERH4, evidence: FASTY, 92.3%ID, 100%length, match=1182)" /note="putative" /protein_id="BAC31337.1" /transl_table=1 /translation="MTVPSAEELDSFKYSDLQNLAKRLGLRANMKADKLLKALKAHLN PETRKENKNQDENQFSTDETEIHVSSEEQAETESGGHVTKTRRRRRKKHKTIHGIPTS QTLLQDHLEMKGTDSSNFQNQENQENQDPRDTAEVPSLPEQRPEDGNAASSGEGEVND FKKLHEARFKKMESIDEYIMRKKKHLKEHSSLNELKLDKKGIVTPVPPRGRLSVPCTP ARQQCPQGHSATKMNVRFSAATKDNEHKCSLTKTPARKSPHVTAPGSASKGQAVFRTP KSKATERTSIAVITPFKLMTEATQTPSSSKKPVFDLKASLSRPLNYKPHKGKLKPWGQ AKENNSLNERVSRVTFHRKTYKQPHLQTREERWKRQEQERKEKKEKLLEARRNLGVTK AQ" BASE COUNT 1100 a 749 c 726 g 949 t ORIGIN 1 aacgtcttgg gtggcgccag ttttgagccg ctctgttttg agttgtgtgg ctgtttttct 61 gggaatcacc gagattgcag aacgcgatga ccgtcccctc tgcagaggag ctggactcct 121 ttaagtacag cgacctgcaa aatttagcca aaaggctggg cctccgggct aacatgaagg 181 cagacaagtt gttaaaagcc ttgaaagcac acctgaatcc agaaacaagg aaagaaaata 241 aaaatcagga tgaaaatcaa ttctccactg atgaaactga gatacacgtt agcagtgagg 301 agcaagctga gacggaatca ggtggtcacg tcaccaaaac gaggaggagg aggaggaaga 361 agcacaagac catccatgga attcctacct cccagacttt gttgcaggat catttggaga 421 tgaaaggaac tgatagtagt aacttccaaa atcaagaaaa tcaggaaaat caagacccca 481 gggatacagc agaagttcct tctctgccgg agcagaggcc agaggacggc aatgcggctt 541 cttcaggaga aggagaagta aatgacttta agaagcttca tgaggctcgt tttaagaaaa 601 tggaatccat tgatgaatat attatgagga aaaagaaaca ccttaaagaa cacagttcac 661 ttaatgaact aaagcttgac aaaaaaggga tagtgacccc agttcctcca agaggaaggc 721 tctctgtacc ctgtactcct gccaggcagc agtgcccaca aggccactca gcaactaaaa 781 tgaatgtcag gttttcagct gctactaaag acaatgaaca taagtgctca ctgaccaaga 841 caccagccag aaagtctcca cacgtgactg cacctgggag tgcttcaaaa ggccaggctg 901 tgttcaggac acccaagtca aaggccactg aaaggacttc tattgcagtt attacccctt 961 tcaagttgat gactgaagca acacagactc caagttctag taagaagcca gtatttgatc 1021 tcaaagcaag cttgtctcgt cccctcaact acaagccaca caaaggaaag ctgaaacctt 1081 ggggacaagc taaagagaac aattctctga acgaacgtgt aagcagagtt accttccaca 1141 ggaaaactta caaacaacct catctccaaa ccagggaaga acgatggaag agacaagagc 1201 aagaacgaaa ggagaagaaa gaaaagcttt tggaagctcg aagaaacctg ggtgtgacta 1261 aagcccagtg accctgtctg ttcctttact ctaacttgtt ttccttttgt atgtttttta 1321 ctctttctct acttcagtca aaagctcttt tctatcataa cttttggtca taatttgtgt 1381 agtgtctctt ctgtgctata tctgagaata tattatcacc ttaaagttca taactaaagt 1441 agttttcatc taatgcccta tacatctcca atttttaaaa gacttgtcct catgattctt 1501 aacagaggtt tttcatgtca aggtcctgat agttccgagg gagatgacct gcaccctttt 1561 ctgcacaagc tgtagcagaa tcttagcatg agaaaataag atatcgctca taggaaaagg 1621 gaggctggaa gaccacattt tttgttcagt agcctggaaa atctattagt cttattgaaa 1681 tcttatttta tcaaggtaaa aagttttagc ttataagagc cttgttctga cttttcatgt 1741 atttgccatc tgtcattcat tataatccta aacgagaaaa cctctactct ctctacttgt 1801 taaataaaag ccacagggca aagggtgtgc tttagttgta caacacttgt ctatcacact 1861 cctgtccctg aactgtacca ccaaaaccaa agctgagaat tgctgctgta agaattactg 1921 tcattggcag acttttttct tacaagtagt aaagagagga aagctgcaag gggtgacctt 1981 ctgatctttg ctctgcctta cagagattct gagatgtgtg taatgcttac aatgttcata 2041 aataaaaatt ttcactgtga taggttcatt gttttaagcg taagttgctc aggatttgga 2101 tggacatcag agatcagtaa acacacctcc tccatccact tgtcttccac aactgttgag 2161 acagggcctc atgtagggca aactggtccc aaactcattt tgtatctgaa gatgaccttg 2221 aactcctgat cccccagcct ctacctccca ggtgagtgca gagttagatg tataccacca 2281 tacctggcta taaagaagtg tttttgtttt tccctttgtt actgactaca ttttgaatct 2341 aaggccttgc aacttaccag aaatagtacg ataacaaggt taataaccaa cagttctatt 2401 tgtatatact ataagtcaat aaagctaagc tgaatgtggt agcataaatc tatagttcag 2461 tactcaggag gtagaggcag gaggagcaga agctcactgt ctgcctcagt ctcgagaccc 2521 tgcttttaaa aacaaactgt agaactgggt ggtatggctt ggtggtaggg ctcttgccta 2581 gcacgcatag gacctgggct tgattctagg aaggagaaaa ataaagcaaa aactaaaagg 2641 ctggatgatg gcccagtggt taagggtctg tactaccttt tttttttttt tttgagacgg 2701 agcttctctg tagccctggc tgtcctggaa ttctctttga tgtgtgcact gtcatgtaat 2761 tagcaggttc tcttgcaaag gactctttaa tttttaggac ccaagtcagg cagctcacaa 2821 ctgcctataa ttccaggtaa aggggttccc acatcctttc tggtattcat gggcacgaca 2881 cccagcactc atgtgtatat gcccacacat atgcacatag ttttaaatat taaatctttt 2941 aaaatatata tatattaagc tgggtttggt gggaggcaaa aacactataa ccaaggctcc 3001 ttacaaaata aaggtgttta atttggggct cacagttcca gggggttaga gtccatgact 3061 actatggcag caggcaggca cacagtggca tgttgctggt gtagtagttg aaagcttact 3121 taaatcctca tccacaaata agcagagaga aaaacgaatg accaggactt tttgaaatct 3181 caaagcccac ccatagtgac acacctcacc aaaaccatat ctcccaatct ttcccaaaca 3241 accaatcgct caagtattca aatatatgag cctatgggag ccattttcat caaaaccacc 3301 agaggtgact cctattttta gtggcaagta tcttagcagg attactgtgc gtttcatctc 3361 agccaaagct atataatgtg gccatctcaa aactacaaaa acagtgcttt aagtcctaaa 3421 gaatttatta aacctcagga gcaccttagg caataatcaa acctttagca aatgggcctt 3481 tgaaagatat ttcatactca aactataatg aagatttcta cact //