LOCUS AK033024 1436 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 11 days embryo gonad cDNA, RIKEN full-length enriched library, clone:7030405H07 product:RING1 and YY1 binding protein, full insert sequence. ACCESSION AK033024 VERSION AK033024.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1436) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=7030405H07 FEATURES Location/Qualifiers source 1..1436 /clone="7030405H07" /db_xref="FANTOM_DB:7030405H07" /db_xref="MGI:2396795" /db_xref="taxon:10090" /dev_stage="11 days embryo" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="gonad" CDS 121..807 /codon_start=1 /note="RING1 and YY1 binding protein (MGD|MGI:1929059 GB|NM_019743, evidence: BLASTN, 99%, match=862)" /note="putative" /protein_id="BAC28131.1" /transl_table=1 /translation="MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSIC DVRKGTSTRKPRINSQLVAQQVAQQYATPPPPKKEKKEKVEKPDKEKPEKDKDISPSV TKKNTNKKTKPKSDILKDPPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLA VTVGNVTVIITDFKEKTRSSSTSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKG DMSAVNDESF" regulatory 1420..1425 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1436 /note="putative" BASE COUNT 412 a 356 c 340 g 328 t ORIGIN 1 agcagcggag ggcgggcggg cggcgcggga gggcgggggc cgctccgcga cgctgcggac 61 cgcgcttctc ctctgagcgg cggcgcgcgc agctgtgggg cgccgggggc cagcccgtcc 121 atgaccatgg gcgacaagaa gagcccgacc aggccaaaaa gacaagcgaa acctgccgca 181 gacgaaggct tttgggattg tagcgtctgc acctttagga acagcgccga agcctttaaa 241 tgcagcatct gcgatgtgcg gaaaggcacc tccaccagga aacctcgcat caattctcag 301 ctggtggcac agcaggtggc acagcagtac gccactccac ctccccctaa gaaggagaag 361 aaggagaagg tcgaaaagcc tgacaaagaa aagccagaga aagacaagga cattagcccc 421 agtgtcacca agaaaaacac caacaagaaa acaaaaccaa agtctgatat tctgaaagat 481 cctcctagtg aagctaacag catacagtct gctaacgcta caacaaagac cagcgaaaca 541 aaccacacct caaggccccg gctgaagaat gtggacagga gcaccgcaca gcagttggca 601 gtaactgtgg gcaacgtcac cgtcattatc acagacttta aggaaaagac tcgctcctcc 661 tccacatcct cttccacagt gacctccagt gcagggtcag aacagcagaa ccagagcagc 721 tcgggctcag agagcacaga caaaggctcc tcccgctcct ccacgccaaa gggcgacatg 781 tcagcagtga atgatgaatc tttctgagat tgcacatgga attgtgaaac tatgaatcag 841 ggtatgagat tcaaaccctc cacctgccca tgctgcttgc accctggaga gtcttctgtg 901 gacgaccttg tagtgacgct accaggagag gttccgcttg ccgtgggcat ctggctacca 961 aggaatttcg taccctgaca gttactcttg acacttttat gtattccatt gttttatatg 1021 attttcctaa caatcattta taattggatg tgctcctgaa tctacttttt atatatatat 1081 ataaaaaaaa tctgctgtgc acaattttcc atgtacatta caactggttt tgtttctgtt 1141 ttgttgaaga gggttgggag gggggaggga acttttattt attgtgttca cagactccat 1201 cctgtcagca tatcctctta aatttagttc tttcttccag ctatactctg tactatcagt 1261 tttgatataa ctatatatat aaatataaaa ttatatataa agggttattt gaaaccaatc 1321 catggcaacg ctggtgcttg atacactgtg aagtgaatac aacattgaac agttgacaca 1381 gatctgggac agtcccttct atgaaagtgc tgaaatatca ttaaaatcag tcttac //