LOCUS AK031706 2896 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030494E03 product:similar to CONSERVED HYPOTHETICAL PROTEIN [Neurospora crassa], full insert sequence. ACCESSION AK031706 VERSION AK031706.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2896) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=6030494E03 FEATURES Location/Qualifiers source 1..2896 /clone="6030494E03" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:6030494E03" /db_xref="MGI:2394982" /db_xref="taxon:10090" /dev_stage="13 days embryo" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="testis" CDS 50..268 /codon_start=1 /note="putative" /note="similar to CONSERVED HYPOTHETICAL PROTEIN [Neurospora crassa] (SPTR|CAD21115, evidence: FASTY, 73.9%ID, 95.8%length, match=207)" /protein_id="BAC27524.1" /transl_table=1 /translation="MSAIFNFQSLLTVILLLICTCAYIRSLAPSILDRNKTGLLGIFW KCARIGERKSPYVAICCIVMAFSILFIQ" BASE COUNT 849 a 530 c 581 g 936 t ORIGIN 1 gcgccccggc ccggaagggt gatgtggctg gaccagcacc ggcctcacta tgtctgccat 61 tttcaatttt cagagtctgt tgactgtaat cttgctgctt atatgtacat gtgcttatat 121 ccgatccctg gcacccagca tcctggacag aaataaaact ggactattgg gaatattttg 181 gaagtgtgcc cgaattgggg aacgcaagag tccttatgtc gccatatgct gtatagtgat 241 ggccttcagc atcctcttca tacagtagct ttggaaacta ccagcatgtg cttgctatca 301 gactgtaaac aaggacttgc ctccagaaaa taatgggaag aatggttaag ccatttgtct 361 ctgaacatgg aatgagataa acttcaagat gctgttctct atttttatgc tattggacca 421 atgagctgaa tgaataatta agatgtaaca gttcaataca caggaatgtg attgtatcca 481 tcaacctcag ttctctcact ccagtattac attctgcaaa tgtcattctg ttgtgtcagg 541 actgcttttc ataaggttct tcgggcacga agtagaaacc cagtggcaaa ttccaaggct 601 cctttgacta gggcttcaaa ataatgtctt cacagaatgg taccttctag cgactggcct 661 atttttattg agaaaaaaac ttgttctatt tttgttgttg ttactgttct tatggattgc 721 attcatattt aaaccctttg gattgctaac cagagtacct ctattcttgg caaattccgc 781 agtttattac aggtgtttaa agtattttaa acaaaactct gaatttcttt agttagccta 841 agagttggct tctagtcaca aagatacagc tgccacactg tgacgaagag caccttagaa 901 agaaaagcag caagtgagcg gtgagcaagt aagcaccgtg cagtcttcgt tctctgtagt 961 cttgtcttcc aaatagaacg tccatcgtag ttacccaaag gtggtatttg tggtgttctt 1021 aatgcagtgc tttaagtcta gtgtatgttc tgtcagcttg aactggaatc tctcttgtaa 1081 ctttgtaggt tataaacata tctcatatct gctttagtct gggtactatg ctctaagtac 1141 atttcagctt tgacacagaa tgtgaataga cgaatatcaa aggatactta caagtttgta 1201 tccaacattt cttcaggttc agctgaaaat cagttactgt ttcaaaacaa agaggaatta 1261 aatcctagct gaaaactata catagcattt attaattaat tactgggttt aactgctctt 1321 tttaaaagtt tgaaaaagaa aaaaaaaatt tttttcttag aagtgaagtt tctataaaaa 1381 caaagccctg aacttgcagt cttcactgtg tagcccaaat ggccaccaga gctagctaga 1441 ccatcagctt tgacatcgtg cttgaagctg tggaggacag tgtagtagtc taacatctag 1501 gaacgcctac ttggtttgta gaggttgctt gtttttaaaa agatttttgg gatgtctgca 1561 gctagttaaa actggtctat ttttatgata attattctac tctgaatttc accttaagct 1621 ttgtattagg tcaaggattt tcactgtgtc ccaaaagtag gactccctcg tcaccatatt 1681 tgtgcacagt aagtagtcac ctatcacttt gatttctggg tggccacctg ttcatcatca 1741 ctaacaacat ttccagaaat gttgtcaact tttttcctaa gttaacatgc atctcatatc 1801 aaaatggaga gaataagaat catctaatat gttctcttta gtttgacatt ttagacaatg 1861 taggtggaaa ttagaggaag acatagttaa cttgaaatat gcatggtaac atacaacttt 1921 tcgcggtatg tagatactga gcagtctaga caggtatttc tagccactac cgtcctgatc 1981 gtttaaagta caggctcttt aggggtgtag gaaagctgca aagataaaag aatcatataa 2041 agaaaggcaa ttagcatttt tggtgtacaa acactgactc ctgttttctg agccacgggg 2101 tcgtgtggga ggtgtgaagc ccacagaata tttagctgtc tttgtgagtg gggtgtggag 2161 gagcagtaaa gcacttcggg cagctggcat ctacacagac tgtaaacaca aagcttagcg 2221 ggcgaggagc actaagactc aggtctgaca atgtccacat gttctccctg gctgccttgt 2281 tggccctaga atcttcagtc catgtcccca catttgtttt atgttgctgt ttggtttctg 2341 attagcttta tctgggccat tgacagggca ggatatgtct tgcttccagg tagtcttgca 2401 agatagtcaa aaggacacat gtcaaattgg tcttaatagt tttaaaaagt taaaattcca 2461 atatggtgtc ctattgatac cttttctact taggctggaa actaccatat atgtttcaat 2521 tcaaggtgtt tcctgctggg gttagtaaga atataaattt ataataaatt tgttcatctt 2581 cttaataaaa ttagtcttgt accatagggt gacacagagt tccataaatt aactcttcca 2641 agtttacaaa gacaaacaaa tccttgcctc catttgtgaa aattatttaa cacttgtaaa 2701 taatattttt ttcaggaaac atttacacaa ttggtatggc atgtgaccat tgaaaataga 2761 tgagttgttt ctctgtattc ataatgtaca tgaaagatga aattaatgtc tatgaagtat 2821 aatgtgctaa ttcttgttat tgacataatc ccaggattct agaaaaaaaa atgaagagtg 2881 atgattcatt gaggct //