LOCUS AK029312 4053 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4832420D20 product:weakly similar to MUCIN-LIKE PROTEIN (FRAGMENT) [Trypanosoma cruzi], full insert sequence. ACCESSION AK029312 VERSION AK029312.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4053) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=4832420D20 FEATURES Location/Qualifiers source 1..4053 /clone="4832420D20" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:4832420D20" /db_xref="MGI:2391382" /db_xref="taxon:10090" /dev_stage="0 day neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="head" CDS 2300..2758 /codon_start=1 /note="putative" /note="weakly similar to MUCIN-LIKE PROTEIN (FRAGMENT) [Trypanosoma cruzi] (SPTR|O15776, evidence: FASTY, 54.4%ID, 53.1%length, match=237)" /protein_id="BAC26388.1" /transl_table=1 /translation="MASPSLGGRHGKPVASAQDKPILSLGGKPLVGLEVIKTTTYSPT TTMLPTTTTTTVLTTTTRPPTTTTTTTRRTTTRRTTTTRHPTTTIRATRRTTTTTTTP EPTTPSPTCPPGTLEHQDEAGNLIMGSNGIPECYPEEGNQLRSNVGNLLT" BASE COUNT 1093 a 928 c 940 g 1092 t ORIGIN 1 tgtaagcctc agtccagtgt gtatctgaaa agtcactaat ggatgtggaa tgttagtcca 61 ggaccacact taagggactg actcatgtca gggaagacac gagctctttc tcagagggaa 121 aagaatggat tttcaagttt tataatttct tggaatagga tgtttctcta tgcattctat 181 attttatact atttctataa gttaaaaagt agttcaataa tcaaaattta atttattttt 241 aacataaata acacaatgaa aacatttcat atttttaagc aactgtgata tctatcaatc 301 cttaaagaag ttcagaaaga caaggaaagg aaaggaaagg aaacaaatgt tccttgctcc 361 aaaatggttt tcaggagtga cccccttggt ggccgtttgg gtgatatgtc aggagtgacc 421 cccttggtga ccgtttgggt gatatgtcag gagtgacccc cttggtggct gtttgggtga 481 tatgtcagga gtgaccccct ggcgtggccg tttgggtgat atgtcaggag tgaccccctg 541 gtgaccattt gggtgatagt caggagtgac cccctgggtg gccatttggg tgatatgtca 601 ggagtgaccc cctgggtggc cgtttgggtg atatgtcagg agtgaccccc tggtgaccat 661 ttgggtgata tgtcaggagt gatccccttg gtggccgttt gggtgatatg ttttcagaac 721 atgcgtctct gacagtttca agcttgtgta caaaatgcat tttttttcta agtaatcagt 781 cctgttgtct gggtatgcat caatttagat caatatatat gagattcctg ggtcattatt 841 tacttaagct cttctgtctg ttgatggatc catgggtttt gacatcagat atgatatact 901 taactaggaa aaatactttg aatgtttttt gcatatttga taagcaaaaa agtgtatgaa 961 ttatgtaggt cagccatgtg atatggtgaa agcagtccaa tatgaggtac tactgtgctt 1021 aatgatgcag gccttgcaca gcttagcgac aagcgtgttt ccctctcatg ctctagcttc 1081 ttcccgtgtc tgctcacgtg tctgcacaca gagttagaga tgtgaacatt ttgagggatt 1141 cctggcacct ctttccatcc gtgttgtttt ggtttaggtt gtagacctgg atcgcggctt 1201 ggtgttgaat gcagaagggc ggtacctgca agactcacat ggcaaccctc tccgggtgag 1261 actcggggga gatggtcgca ccatcgtggg tgagtgagac tggttcctag gaaccaaagc 1321 ctcgtgaact gtggaatagg tttggtcctc accaggcccc tcctttctaa tggttgccag 1381 tggctctgcc ccgtcagcca tgtgggaaga aggtccccaa agggaccaga atatagcatt 1441 tgcctcatgg ttttaatcac ccaatttctt tagaatcctc tcctagaaat gtataatcta 1501 gtttgttcct gagtttagcc atttggagca caggtcagaa aactacagcc cacagatcaa 1561 ctcctgcgta gcctgttttt gcaaggccta tgagcccaga atagttctta aaaatgattc 1621 ttcccctatt gcagaagaac aatgtctgtc ttgtgacatg tggtaaacac atactaaatt 1681 cacatttcag catacacacc acacacacac acacacacac acacacacac acacacacac 1741 acatacacac agaggcatta ttggaacatg ggagcattta tttaggtagc ccatctgttc 1801 tgtattgttt atgccctgtc tagtgtatgt tttgccctac aagggctgag ttgaacagct 1861 ccatctgccc tgtaaagttt aaaatacata ctctctggcc ttttgtgaga aatgtttgct 1921 gttcctggcc caacctaaca tgtgttctcc tctagaagtt aaaataaaga gcaaagagcc 1981 acttccctta gcagacacgg agttttctct ggtaatggca catcctgaca tgagagtttc 2041 tatggttcta taaaggggtg gggggatgat ggacgatgtc ctaaacccat ctattctaga 2101 tagcagccga tactaccacc tcagatatat acatccccag ttactcctct gccatttgct 2161 tgttaaagca taggcatacg tcagctccga gaagacacat tctctttgtg cctcctgacc 2221 tctagattgt ttcacctcgc tacatatctc tcccttggtt ttatttcaga tctgggagga 2281 acccctatgg tgagtcctga tggcctcccc ctctttgggg gggagacatg gcaaacctgt 2341 ggccagtgcc caggataaac ccatcttgag tctcggaggg aagcccttag tgggcttgga 2401 ggtgatcaaa accaccacat actctcctac cacaaccatg cttccaacca caacaaccac 2461 cactgtgctg accaccacaa cccggccgcc tacaaccaca accaccacca cccgccgcac 2521 aaccacccgc cgcacaacca ctaccaggca tcccacaact acaattcgag ctactcgcag 2581 gacaacgacc actaccacca ctccagaacc taccacccct tctcctactt gtccccctgg 2641 gaccctggaa caccaggatg aagctggcaa ccttataatg ggctcaaatg ggattccaga 2701 gtgctacccc gaggaaggta accaacttcg ttctaatgta ggcaacttac ttacctaata 2761 tactgcaaga cagagataag tctcagagcc agacagaaaa gggtgaatgc tgtctagggc 2821 agaatggcag ccaagcagaa tcaaggctgt cagattcatt cagtaagaaa tatggcgtga 2881 gatatatcta tacacacagg ttatcattaa aattcagggt gtcttttgtt tatctaacaa 2941 ctgaaacagt attattggtt caggttatgt ttcccaaggg attctactgt gtattgttgg 3001 tatgtctatg tgtatataca tgcgtgagaa agagagaacg agagagtgag agagcaagag 3061 atggagggag agagggagag ggagagagga agaagtactg gtaggtcagt tctgagatgg 3121 ttctgagatt taacaggtca gatgggtttc tgacttggtg gctcattaga taacaatctc 3181 cccatgagct ccaggaaagc tgtcagtgca ctgggcagcg aagctccctg tgatcagctt 3241 tccttttgga gacagccagt gtcaagtggt gaggcttctc ctgagagtat ggagtttcca 3301 ttggataaaa acagacaaca tctcccgctt caccgcgctt gatcagggct ctccagttac 3361 tcctgacatc tgcctgtctt cccaccgatg gtccaggtca cagtagaatg gcgtgtcatc 3421 atcccattca gactactgtg gacaaagctc tgcctctgac atgcaggaga cagagtcccg 3481 ctaggctcca taggctgtaa agcccgtgta tcttagtcta acacaggctg aagacccttc 3541 ctctcaggac gtatttgcaa gcctagaact gcagagcatc actgcgcatg acgagccctg 3601 acgaatctga cattaacact gcgttcagaa tgagaagcca cttccaagga attgtttgca 3661 tgggaagatg aaaagttaat gggaaaactt gacatcttaa aggtccacag cagagagcaa 3721 agaggtgcag accgaggggg cgagagagtc actggtgaga gaagtcttag aatggccaga 3781 tctagactgg atgattgcac atctctggaa gtgctttgag cctactgaac gttcaagagt 3841 ttgtaacgtg atcttgttac atgttggaga ggtacacatt catcattata gaagataatt 3901 ccagcctgcc gtgttcaccc tcctgacaga aaatacaaag acaatgattg ggatgtattc 3961 ccagtcgaca caccatacca tatggggatg tccctaattt cccaaggctg gagtcaactt 4021 cctccctcca aacttttacg gagaacaaac ttt //