LOCUS AK020433 1091 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430023L15 product:SUPPRESSOR OF G2 ALLELE OF SKP1 HOMOLOG (SUPPRESSOR OF G2 ALLELE OF SKP1, S. CEREVISIAE, HOMOLOG OF) (PUTATIVE 40-6-3 PROTEIN) homolog [Homo sapiens], full insert sequence. ACCESSION AK020433 VERSION AK020433.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1091) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (18-AUG-2000) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=9430023L15 FEATURES Location/Qualifiers source 1..1091 /clone="9430023L15" /db_xref="FANTOM_DB:9430023L15" /db_xref="MGI:1899227" /db_xref="taxon:10090" /dev_stage="12 days embryo" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="embryonic body between diaphragm region and neck" CDS 58..1068 /codon_start=1 /note="SUPPRESSOR OF G2 ALLELE OF SKP1 HOMOLOG (SUPPRESSOR OF G2 ALLELE OF SKP1, S. CEREVISIAE, HOMOLOG OF) (PUTATIVE 40-6-3 PROTEIN) homolog [Homo sapiens] (SPTR|Q9Y2Z0, evidence: FASTY, 86.9%ID, 100%length, match=1008)" /note="putative" /protein_id="BAB32098.1" /transl_table=1 /translation="MAAAAAGPASSQRLFQSFSDALIDGDPQAALEELTKALEQNPDD AQYYCQRAYCHILLGKYRDGIADVKKSLELNPNNCTALLRKGICEYHEKDYASALETF AEGQKLDSTDTNFDTWIKRCQEIQNGSESEVSASQRTQSKIKYDWYQTESHVIITLMI KSVQKNDVRVGFSERELSALVKIPAGEDYSLKLRLLHPIIPEQSTFKVLSTKIEIKMK KPEAVRWEKLEGQGDEPTPKQFTADVKNMYPSSSHYTRNWDKLVGEIKEEEKNEKLEG DAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWK QY" BASE COUNT 356 a 215 c 267 g 253 t ORIGIN 1 tgggagctgg taaccaaggt agaaacgctc aggcagaagc tttcttgact cctagggatg 61 gcggcagctg cagcaggacc tgcatcgtcc cagcggcttt tccagagctt ctcagatgct 121 ctgatcgacg gggatcccca ggcagcatta gaggagctga ccaaggcctt ggaacagaat 181 ccggatgacg cacagtatta ctgtcagaga gcttattgtc acattcttct tgggaaatac 241 cgtgatggta ttgccgatgt aaagaagtct cttgaactca atccaaataa ttgtactgct 301 cttctgagga aagggatatg tgaataccat gaaaaagact acgcttctgc cttagaaaca 361 tttgcagagg gacagaaatt agatagtaca gataccaatt ttgacacctg gattaaaaga 421 tgccaagaaa ttcagaatgg atcagaatct gaagtgtctg catctcagag gacccagtca 481 aaaatcaagt atgactggta tcaaaccgag tctcacgtaa tcatcaccct tatgatcaag 541 agcgttcaga agaatgatgt acgtgtggga ttttcagaga gagagttgtc tgctttggtg 601 aaaattcctg ctggagaaga ctacagtttg aagctgaggc tgctccaccc tataatacca 661 gaacagagta cattcaaagt actttcaaca aagattgaaa ttaaaatgaa aaagccagag 721 gcggtgagat gggaaaagct agagggacaa ggagatgagc ccacaccgaa acagttcaca 781 gcagatgtaa agaacatgta tccgtcctca tctcactata cccggaactg ggataagttg 841 gttggcgaaa tcaaagaaga agaaaagaac gagaagctgg agggcgacgc agctttaaac 901 aagttattcc agcagatcta ctcagacggt tccgatgaag tgaaacgtgc catgaacaag 961 tcatttatgg agtctggtgg tacagtcttg agtaccaact ggtctgatgt aggtaaaagg 1021 aaagttgaaa tcaaccctcc cgatgatatg gaatggaaac agtactaaat aaatcaattt 1081 gctatcactg t //