LOCUS AK017246 1765 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched library, clone:5430400L19 product:gene trap ROSA 26 antisense, Philippe Soriano, full insert sequence. ACCESSION AK017246 VERSION AK017246.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1765) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=5430400L19 FEATURES Location/Qualifiers source 1..1765 /clone="5430400L19" /db_xref="FANTOM_DB:5430400L19" /db_xref="MGI:1907947" /db_xref="taxon:10090" /dev_stage="6 days neonate" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="head" CDS 110..1057 /codon_start=1 /note="gene trap ROSA 26 antisense, Philippe Soriano (MGD|MGI:1277973 GB|NM_008188, evidence: BLASTN, 99%, match=1035)" /note="putative" /protein_id="BAB30650.1" /transl_table=1 /translation="MSCDTQEATRECLGMNLDGNKEPVSLVESGVRSESEHLQVTIGA TVPTGFEQTAAGEVREKLKSACRISKDRGKIYFDIAVESLAQVHCLRSVDNLFVVVQE FKDYQFKDTKEEVLRDFEELAGKLPWSDPLKVWQINTTFKKKKAKRRKANQSAGKEKA DCGQGDKADEKDGKKKHASSTSDSHILDYYENPAIKEEISTLVGDVLSSCKDETGQSL REETEPQVQKFRVTCNRAGEKHCFTSNEAARDFGGAIQEYFKWKADMNNFDVEVLLNI HDNEVIVAIALTEESLHRRNITHFGPTTLRSTLAYGMLR" BASE COUNT 519 a 339 c 435 g 472 t ORIGIN 1 gcgtttccgg gctggcacct cggcttccgg cggcgtgctc gcggtgcgga gaccggaagg 61 gtctgtgctt gctgccgaga ctgttggtcc ttttagaaac atctccatca tgtcttgtga 121 cactcaagaa gctaccagag agtgcctggg tatgaacctt gatggcaaca aagagcctgt 181 gtcgctggta gaaagcggcg tcagaagtga gtcggagcat ctccaagtca ctattggagc 241 cactgtaccc actggctttg aacaaacggc tgcgggggaa gtgagagaga aactgaagtc 301 ggcctgcaga atcagcaaag accgcggaaa gatctatttt gatattgcag tggaaagtct 361 ggctcaggtt cattgtctga gatcagttga taacttgttt gtggttgttc aggagtttaa 421 agattaccag ttcaaagata cgaaggaaga agttctaaga gactttgaag aactggctgg 481 aaaactccca tggtcagacc ctttaaaagt ctggcaaatt aacaccactt tcaagaagaa 541 gaaagcaaag cgcagaaagg caaatcagag tgcaggtaaa gagaaggctg actgtggaca 601 aggagacaaa gcagatgaga aagatggtaa gaaaaagcat gccagcagca cttcagattc 661 acatatcttg gactattatg aaaatccagc catcaaagaa gagatatcaa ccttagtagg 721 tgatgtcttg tcgtcttgca aagatgaaac tggtcaaagc ttaagagaag aaactgaacc 781 acaggtacag aagtttagag tcacctgcaa cagagcagga gagaaacatt gctttacctc 841 caatgaggct gcgagagatt ttgggggtgc tattcaagag tactttaagt ggaaggctga 901 tatgaacaac tttgatgtag aggttctcct gaacatccat gataatgaag tcattgttgc 961 tattgcactg acagaagaga gtctccatcg cagaaatatt acacattttg gacctacaac 1021 tcttaggtca actcttgcct atgggatgct caggtaacag aaggggattt tgctgtccat 1081 attgtaatga acactttgct ctgaattaaa tcactcattt tctaaaaaaa aacaaaacaa 1141 aaactcccaa aaccattttc ttagttagaa ttacaaagta cctattttct cttcagtatt 1201 tactgttgtc agtttttgat gcagaaaaca ccacgtggat ggtttattag tattcttggt 1261 tatacatgtg agagtggtgt tgtgtgtctt cagcgaggag ctgcttctgt cgagagaggc 1321 tgtgctgctt taggcaatag agtgaagcag aggagatcct tgtgatgtgt gagtgagtac 1381 agaccttgtc tgttgagtga cagtgctggc atgcagcttg gtagcctgag tgctgggatc 1441 atggtacata tcaccacacc ccatttactc atagttttaa atgttacact ggctgtaacc 1501 tagggatcgt gttgggactt tgacaagtgc aagacaagca gcctgcctct gttgtcagtc 1561 ttacgttctt ggtgttttct ttctcaaata agtctttttc ccccctacac ttgagatttc 1621 agtactgcaa aatgggcttg acatgggatg ccaaagatta ttcatgtgct caacttggca 1681 gcacatacac tcaactaaag caatatagag aagattagta tggcccctgc ataaagatga 1741 cagacagatt tgtgaagtgt tctat //