LOCUS AK014606 2692 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
library, clone:4632433K11 product:hypothetical protein, full
insert sequence.
ACCESSION AK014606
VERSION AK014606.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2692)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000)
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4632433K11
FEATURES Location/Qualifiers
source 1..2692
/clone="4632433K11"
/db_xref="FANTOM_DB:4632433K11"
/db_xref="MGI:1910796"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/note="clone_lib: RIKEN full-length enriched mouse cDNA
library"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="skin"
CDS 475..891
/codon_start=1
/note="hypothetical protein (evidence:
ProCrest,decoder,NCBI CDS Predictor,Longest-ORF)"
/note="putative"
/protein_id="BAB29460.1"
/transl_table=1
/translation="MRKLGTLLSKYTNLLHHLIAQNFLQHNQIDISKQPKPGHSPFQI
MDNYPENWNTRLTEKTYRKSFNRNRLEVPTLTLYANSQVLLAPYHSVISFFTPCTGPP
RWSLANPASELPRAMQEDAYFRVQNREMGNFFIDRF"
regulatory 2670..2675
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2692
/note="putative"
BASE COUNT 633 a 688 c 667 g 704 t
ORIGIN
1 agttactata tttcacttct ccttgaatct gaccacttat ctgcactgcc actgtgttgg
61 tagtcccctg ttttttgttt gtttgtttgt ttgtttgttc tgttttgttt tcttcgagac
121 agggtttctc tgtgtagccc tggctgtcct ggaactcact ttgtagatca ggctggcctc
181 gagctcagag atccacctgc ctctgcctcc caagtgctgg gattaaaggt gtgtgccacc
241 accgcctgtc ttttttgttt gtttggttgg tttttttttg ggggggggta gtcccctctg
301 aaagcagcaa ggagtttctg tttagtggca aggattcatg tgaaaaaacc aagacactcc
361 gttgtcttgg gaagcaggct ctttggagga gctggtgagt ttttattatg catcatccga
421 ggatcgtctc ttggggatgc tggatgacaa ggactgaact agcaacacat ctccatgaga
481 aaattaggga cccttctgag taagtacacc aacctcctac atcacctcat tgcacaaaac
541 ttcttacaac acaaccaaat agacatctcc aaacagccca agcctggtca ctcaccattc
601 cagataatgg ataactaccc agagaattgg aatacaagac tgacagagaa gacttacaga
661 aagtctttta ataggaacag actggaagtc cccactctta ccctgtacgc taactcccaa
721 gtccttttag ccccttacca cagtgtcatt tctttcttta caccctgtac tggcccacca
781 aggtggtcac tagctaaccc tgcctcagaa ttgcccaggg ctatgcagga agatgcctac
841 ttcagagtgc agaatagaga gatgggaaat ttctttatag acaggttctg agcctaaggc
901 ttaaagggat accaagtgat tgcctgctta tagtgtgtgc tctcagttgc ttgcaactaa
961 gtttagtggg ttaaagagag cccactatgg ggtaggatgg agaagtgagc agggcttaga
1021 gtgaatcttt atgagcaggt tcacatctga gagatgtggt ttaggtactc tcggttttga
1081 ggggaaggta tcccagcatc cctttagaga tgacttggtg ggcatcttct gcactggagg
1141 gtaggcatcc caggaccagt gcaatccagt tgaagtaggc aaaacatttc attggaccag
1201 aggtggtggt acagaaagtc ttgctttcca gcctggtctg gtctggacct catgatcctc
1261 ctgcctcagc ctctagtgta ctgggattac aggcctttac catgcccagc tgtctatgta
1321 tttttagata tatctgggta cccacagacc ccaagtacct ctttcctgag tctcaagtgt
1381 agcatgggtt tctgggagac cagaaccagg ttcccttttt catctaactc caactgctca
1441 tgatttctcc ttggcctctg cctctatttg cccacccacc tctcctacga tatgtcctag
1501 cttccagcct actggtcaac ctccacattc actttcacag tctctctaca cccttcttcc
1561 atagtgttct ctgtcccaca tttacttcat gattcttggg acactgaaga tgatctcagt
1621 tggcctctag actctcccac tccagaccct ggtccatgga agtgggtgcg ctggtgtttg
1681 cggaagttgg aggagttatt gaaagtgcgg tcacagagca tgcatcggaa ggggcgctcg
1741 cctgtgtgga tgcgggcatg accactcagc acagaggact gcgtgaagcc tttgccacag
1801 atactacagt ggtagggccg ctcccctgta tgcacccgct cgtggtctcg catatctgag
1861 gagcgtcgga agggcttggc acaaaacctg caggcgaaag gcttgcctac cacagcaccc
1921 gcagctgctg cagccatcac cacctccgac ctctcctggg ccacccttga gtttggctgt
1981 ccggttgttg ttgtgggtag aagcctttca gaggtgccgg gctctacccc atgtcggtgt
2041 tggtgccgga gcagaggtgc caaggcctta aaagcccgtg ggcagaggga acagcggtaa
2101 ggccgttctc ctgtgtgcaa gctgtaatgg gcacgcaggc tagcaggacc tggacagctg
2161 tggccacaca catgacaacg gctaggatcc ccatcctgcc caagcccctc catgcttgcc
2221 aggtggccat gctcatgaaa cagcagctct gagactagac ggaaggcagc aggacacagg
2281 gcacaatgaa aagatcctgg ctctgggggc tcagggaccg atgtggtatc tgtgactttt
2341 accacctgga tctcgatgag gtcacctggg ggtgtgacag ggcgaccatc aggcaccagg
2401 acctggagag cagaagaaaa aacaggaggc tgtggacctg cttggagaga gtcttcattc
2461 aataatgcct ccacttattc aaacacttgc tttggcagtg aagatgtctc agtgggtaaa
2521 gacacttacc aaatctgacg acctgagtat gatccctggg acccacaggg tggaaagaca
2581 gactgactga cttcctgaga tgccctctga cctccaaatt cctgtgccat ggcacacact
2641 cacaccctct cctcacataa taaatgaaaa ataaaaattt aaataaaatg tc
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