LOCUS AK013916 873 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched
library, clone:3100002H09 product:hypothetical protein, full
insert sequence.
ACCESSION AK013916
VERSION AK013916.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 873)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000)
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=3100002H09
FEATURES Location/Qualifiers
source 1..873
/clone="3100002H09"
/db_xref="FANTOM_DB:3100002H09"
/db_xref="MGI:1902559"
/db_xref="taxon:10090"
/dev_stage="13 days embryo"
/mol_type="mRNA"
/note="clone_lib: RIKEN full-length enriched mouse cDNA
library"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="head"
CDS 47..469
/codon_start=1
/note="hypothetical protein (evidence: CDS)"
/note="putative"
/protein_id="BAB29055.1"
/transl_table=1
/translation="MASPPDGGQNGNSMRVGDAVGWFVNVSALLNLAWLSVAAVVSVW
VTEIGSILGLLQHSVPTGQVPDGGFGHRPSVWLWSEFIHSLTGDFLMSLKQSFFALVV
PMEAIGPSCRANPKSVFSLTAGSPVLQSLRSSTNSSLA"
BASE COUNT 214 a 186 c 245 g 228 t
ORIGIN
1 ggacaccatg agtacttatg ggtagactca tggctctacc ctatttatgg cttctccccc
61 agatggaggc cagaatggga actctatgag ggtaggagat gcagttggtt ggttcgtgaa
121 tgtgtccgca ctgttaaacc tggcatggtt gtcagtggct gcagttgtga gtgtgtgggt
181 gacagagatt ggaagcattc tgggcttgct ccagcactct gttcccacgg ggcaggttcc
241 agatggtggc ttcggccatc ggccttctgt ctggctgtgg tcggagttta tacacagtct
301 cacaggtgac tttctcatga gtttaaagca atcttttttt gccctagttg tccccatgga
361 ggccataggc ccgagttgca gggctaaccc caaaagtgta ttttctctta ctgctggcag
421 tcctgtgctc caatctctca gaagttctac aaacagtagc ctggcttgac ttcccaggat
481 gaacacatca ccaggagggt gaaatggttg tcactgctgg atgggggcag caggtgccag
541 ctggccctgt gcctggctag tgggggagtc aatagcctag cattaggagc cgaattagtc
601 agtgttttct agaggagcag acaaaataca atgaaaaaaa tatatatgta gaacttatta
661 gagtagctta taggctgtgt tccatcatga tggaaaggcc aagaatgtga gacttgttca
721 ttccatagct gtcccaatct ggtgctggag tcccagagac gtcccagaga gctgcaaatc
781 ttcagtttac actgagatgc agaagtaggt tcaacctagg aatgcctcag caataggata
841 gatgaacttg caagagagag ggagggcaaa cag
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