LOCUS AK013502 1003 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900009D01 product:inferred: RIKEN cDNA 1200003C05 gene / Similar to hypothetical protein [Mus musculus], full insert sequence. ACCESSION AK013502 VERSION AK013502.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1003) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (10-JUL-2000) Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=2900009D01 FEATURES Location/Qualifiers source 1..1003 /clone="2900009D01" /db_xref="FANTOM_DB:2900009D01" /db_xref="MGI:1896250" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /note="clone_lib: RIKEN full-length enriched mouse cDNA library" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="hippocampus" CDS <1..306 /codon_start=1 /note="inferred: RIKEN cDNA 1200003C05 gene / Similar to hypothetical protein [Mus musculus] (UniGene|Mm.28555 TIGR-MGI1|TC8783, evidence: UG/TGI)" /note="putative" /note="start codon is not identified" /protein_id="BAB28884.1" /transl_table=1 /translation="GLLYYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVL FSHWLLHAYGIVSISRVDRLEHDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH" regulatory 987..992 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1003 /note="putative" BASE COUNT 310 a 185 c 190 g 318 t ORIGIN 1 ggcctcttat attacgcctt cccgtacatt atattagtgt tatctctggt taccctggct 61 gtatacatgt ctgcttctga aatagagaac tgctatgatc tcctggtcag gaagaaaaga 121 cttatcgttc tcttcagcca ctggctactg cacgcctatg gcatagtctc catctccaga 181 gtggacaggc tggaacacga cctaccgctt ttggctttgg tacctacacc agctctgttt 241 tacttgttta ctgcaaaatt taccgaacca tcacggatac tctcagaagg ggccaatgga 301 cattgaatat aaaatgccaa aaaaaaaaaa aaaaaaaaaa aaaaaatccc gaaaagtatt 361 cttcattaaa aaaaagtaaa gaagaattaa aatgtattaa tagcattctt tcatacatgg 421 gaagaagatt gtccagatat tataatgctt gtgctttatc tttggattta ttggaccttg 481 tggttacact tggagactac agggcctcct gttactgtgc tctgcctatc ttagctatca 541 caccggaagc ccaaacaggc aggggtaatt gctctttgga gcacggccat gtttttgtac 601 acctgtgctg atggtgtctc cctgcttttt gtgaagaacc tttaacaagt gtattctgaa 661 ctcaattgct gtggcatcat tatgccttct gttgtctata cattaccttc gaggaattac 721 aaaggcagat gtgcttgtgg agtgtgatgg caaaaacaga aacaaaggat gtctttgtca 781 atggctattt attttcacca atacagtgtt tagtaatatt tcaaaaataa agcataattt 841 atataacgaa ctttctgttt agagacagtt tggttgaaga catgttcaga ttattgttcc 901 tgtaaagaag aaaacaataa agaatttaat tgtaaaataa ctccatgttc tgataattct 961 tttttgctac agtgattatg gaagtaatta aaaatgttaa gcg //